Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g05231 ATGGGTTGTTGTCAATCTTCTTTGTTTAGAAGAAGAGTAAGAGAGAATCATCATCCTGAAAAACACAAAGAAAAAGAACAGCAACAACAACAACCCTACCATCACCAGCTTCAGCACCGCAACAACAACAACAATCTGAATCAAATTGACGGCGAGAAAGAATCAGCAACGGTGGATCCTTCATCTTTTACTTTCTCAGAGTTTTCATTAGCAGACTTGAAAGCAGCTACGAATAATTTCAGCTCAGAGTATATCGTTTCTGAGAGTGGTGAGAAAGCACCTAACTTGGTTTATAAAGGTAGGTTACAGAATCAGAAGCGTTGGATTGCTGTGAAGAAGTTCAGTAAAGCTGCTTGGCCGGATCCAAAGCAATTTGTTGAAGAAGCTTCTGGTGTTGGGAAATTGCGTCATCCTAGGCTTGCTAATTTGATTGGTTATTGTTGTGATGGTGATGAAAGGTTACTTGTTGCTGAGTTTATGCCTAATGATACCCTCGCCAAACACCTCTTCCACTGGGAAAATCAGACTATTGAGTGGGCCATGAGGTTAAGAGTTGCTCTTTATATTGCACAAGCTTTGCATTATTGTACTTCTGAAGGACGGCCCTTATACCATGATTTGAATGCTTATCGCGTTCTATTCGATGAGGAAGGTGATCCGCGTCTCTCTTGTTTTGGTTTAATGAAGAACAGCAGGGATGGAAAAAGTTATAGCACAAACCTTGCTTACACACCTCCTGAATATTTAAGAAATGGAAGAGTCACCCCTGAAAGTGTCATTTACAGCTTTGGAACCGTTCTTCTCGACCTACTCAGTGGCAAGCACATCCCTCCTAGTCATGCACTTGATATGATACAGGGAAAAAACAACATGCTCTTGATGGATTCTCATTTGGAGGGAAAGTTTTCTACCGAAGAGGCAACAGTAGTTGTCAATCTTGCCTCTAAATGTTTGCAATATGAACCGCGAGAGCGGCCTAATACAAAGGATTTGGTCACAACACTTGCTCCATTGCACACAAAACCCGATGTTCGTTCTCACATCATGCTTGGAATTCCAAAGCAAGAAGAAGCTCCATCAACCCCACAACGTCCTCTTTCAGCAATGGGTGAGGCTTGCTCAAGAATGGACCTCACTGCAATACATCAGATCTTGGTTGCAACTCACTACAGAGATGATGAAGGGACTAATGAGTTGTCATTCCAAGAGTGGACTCAACAAATGAGAGATATGCTGGAGGCAAGGAAGCGTGGAGATTATGCATTCCGTGACAAGGATTTTAAGACAGCCATTGATAACTATTCCCAGTTCATTGATGTGGGAACGATGGTCTCACCCACAGTTTTTGCAAGGCGTAGTCTATGCTACCTGTTATGTGATCAACCAGATCCTGCTCTACGAGATGCAATGCAAGCACAATGCGTATATCCAGACTGGCCCACAGCTTTCTACATGCAGTCTGTTGCTCTTGCAAAGCTGGACATGAACAAGGATGCGGCTGACATGTTAAATGAGGCGGCTGCATTAGAAGAGAAGAAGCAAAGAGGAGCAAGAGGATCATAG 1563 0.4306 MGCCQSSLFRRRVRENHHPEKHKEKEQQQQQPYHHQLQHRNNNNNLNQIDGEKESATVDPSSFTFSEFSLADLKAATNNFSSEYIVSESGEKAPNLVYKGRLQNQKRWIAVKKFSKAAWPDPKQFVEEASGVGKLRHPRLANLIGYCCDGDERLLVAEFMPNDTLAKHLFHWENQTIEWAMRLRVALYIAQALHYCTSEGRPLYHDLNAYRVLFDEEGDPRLSCFGLMKNSRDGKSYSTNLAYTPPEYLRNGRVTPESVIYSFGTVLLDLLSGKHIPPSHALDMIQGKNNMLLMDSHLEGKFSTEEATVVVNLASKCLQYEPRERPNTKDLVTTLAPLHTKPDVRSHIMLGIPKQEEAPSTPQRPLSAMGEACSRMDLTAIHQILVATHYRDDEGTNELSFQEWTQQMRDMLEARKRGDYAFRDKDFKTAIDNYSQFIDVGTMVSPTVFARRSLCYLLCDQPDPALRDAMQAQCVYPDWPTAFYMQSVALAKLDMNKDAADMLNEAAALEEKKQRGARGS 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g05231 520 SUPERFAMILY TPR-like 412 514 IPR011990 GO:0005515
Trre10g05231 520 FunFam probable serine/threonine-protein kinase At4g35230 409 518 - -
Trre10g05231 520 Gene3D Transferase(Phosphotransferase) domain 1 161 352 - -
Trre10g05231 520 MobiDBLite consensus disorder prediction 31 58 - -
Trre10g05231 520 FunFam probable serine/threonine-protein kinase At5g41260 161 352 - -
Trre10g05231 520 FunFam probable serine/threonine-protein kinase At4g35230 55 159 - -
Trre10g05231 520 MobiDBLite consensus disorder prediction 1 58 - -
Trre10g05231 520 MobiDBLite consensus disorder prediction 10 30 - -
Trre10g05231 520 Gene3D Tetratricopeptide repeat domain 409 518 IPR011990 GO:0005515
Trre10g05231 520 Pfam Protein tyrosine and serine/threonine kinase 97 335 IPR001245 GO:0004672|GO:0006468
Trre10g05231 520 ProSiteProfiles Protein kinase domain profile. 83 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g05231 520 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 29 515 IPR045845 GO:0004672|GO:0009742
Trre10g05231 520 Gene3D Phosphorylase Kinase; domain 1 54 159 - -
Trre10g05231 520 Coils Coil 492 512 - -
Trre10g05231 520 SUPERFAMILY Protein kinase-like (PK-like) 60 339 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g05231 Trre-Chr10 59043110 59050396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g05231 25 343 Glycoside Hydrolase AT3G07070 33.138 5.48e-47 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Trre10g05231 PK_Tyr_Ser-Thr 3.7e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g05231 K14500 - gmx:100808907 920.613