Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g05223 ATGGAGATGCAACAGCTTCTTAGCATGGGTTTCCCCGACGAGTTAGCCGCCCAAGCCTTAGCTGCCACTGGCGGCAAATCCACCGTCAAAGCCACCGAATGGATTCTCACTCACAAACCCAATTCCACCACTCTTGTTAACTCTTCATCTTCACCTTCTTCACCATCACCTTCATCACTTGCTGCTTTCCAACCCAAACTCGACCGTTTCTTCCACACCCCACAACCCAATAATGTCTCACAACAACAACAAACAGAGGAACCAACCAAACGCATCAAGTTATCATCTTCACCAACCCCACAAACACAAACACAGACACAATCTCAAACACAAACACTACAAAACAAACCCTCTTTTTTCTTCAACCGTTCTAAAAAACAACTAACTCAAACCCACACTCACGAACCCTTATACGAACGTCTCCGTCCAACAACATTGGACGATGTTGTCGGACAGGATCATCTCCTTTCAACAAATTCCATTCTTCGTTCCGCAATCCAACGCAACCGTCTTCCTTCTATCCTCTTGTGGGGTCCACCAGGTACAGGTAAAACCACCATTGCAAAAGCTATTGTCAATTCATCAAATTCAACTTCAACTTTCTATCGCTTTGTATCTTTATCTGCTGTTACTAGTGGTGTTAAAGATGTTAGAGATGCTGTTGATGAAGCTAGAAAACTTAGACTCAAAACAAATCAAACCACTGTTCTTTTTGTGGATGAAGTTCATAGGTTTAATAAATCTCAACAAGACTCTTTTTTACCTGTTATTGAAGATGGTAGCATTGTCTTTGTTGGTGCTACTACTGAAAACCCTTCTTTTCATTTGATTACACCACTTTTATCTCGTTGTCGTGTTCTTACACTTAACCCTCTTCAACCCCATCATCTTGTTTTGCTTCTTAACCGTGCTGTCACTGATATAGACAAAGGGTTGGTGCAAAGCCTCGGTTTTGGTTCTGGTTCTTCCCAGGTTGATGTAAGTGTTGGTGAGGATGCGGTTGATTTTATAGCGAACAATTGCGATGGAGATGCTCGTGTTGCTTTAAATGTATTGGAGATTGCTGCTGTTAATGCGGCTGCTCGGGTTCAACATGATAATGAAGAATGCAAGGATGATGTTGGTGTTAATGTTAGTGTTGAGGATGCTAAGGAGGCACTTCAATGCAAGCATCTTGCTTATGATAAAGCTGGTGAAGAACACTATAATTTAATCAGTGCATTGCACAAGTCTATGAGGGGAAGTGATGCTGATGCAGCAATTTATTGGTTGGCGAGAATGTTAAAGGGAGGTGAAGAGCCACTTTATATTGCACGTAGGCTTGTACGGTTTGCAAGTGAGGATGTTGGTTTGGCTGATCCTTTAGCTCTTAATCAAGCTGTTTCCTGCTACCAAGCTTGTCACTTTATAGGAATGCCCGAGTGCAATGTGATACTTGCACAATGCGTTGCTTACTTGGCTTTGGCTCCTAAATCTATAGCAGTTTATCGAGCGATTGGAGCTGCTGAGAAGGTAGTGAGGGAATCTGTTGGACAGAATGAAGGTGTGCCTCTTCATCTCAGGAATGCACCAACCAAATTAATGAAGGAAATTGGGTATGGGAAGGGATATATATACACTCCTGATAACCCTTCCGCAACACAGAGCTACTTGCCACCCTCCCTTCAAGGGTTCAAATTCCTCCATTGGCCTGACAGGAATCCCTCTGAATCTGATGGATGA 1722 0.4292 MEMQQLLSMGFPDELAAQALAATGGKSTVKATEWILTHKPNSTTLVNSSSSPSSPSPSSLAAFQPKLDRFFHTPQPNNVSQQQQTEEPTKRIKLSSSPTPQTQTQTQSQTQTLQNKPSFFFNRSKKQLTQTHTHEPLYERLRPTTLDDVVGQDHLLSTNSILRSAIQRNRLPSILLWGPPGTGKTTIAKAIVNSSNSTSTFYRFVSLSAVTSGVKDVRDAVDEARKLRLKTNQTTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFVGATTENPSFHLITPLLSRCRVLTLNPLQPHHLVLLLNRAVTDIDKGLVQSLGFGSGSSQVDVSVGEDAVDFIANNCDGDARVALNVLEIAAVNAAARVQHDNEECKDDVGVNVSVEDAKEALQCKHLAYDKAGEEHYNLISALHKSMRGSDADAAIYWLARMLKGGEEPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFIGMPECNVILAQCVAYLALAPKSIAVYRAIGAAEKVVRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDNPSATQSYLPPSLQGFKFLHWPDRNPSESDG 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g05223 573 SMART AAA_5 170 292 IPR003593 GO:0016887
Trre10g05223 573 PRINTS CbxX/CfqX superfamily signature 224 243 IPR000641 GO:0005524
Trre10g05223 573 PRINTS CbxX/CfqX superfamily signature 173 188 IPR000641 GO:0005524
Trre10g05223 573 PRINTS CbxX/CfqX superfamily signature 344 356 IPR000641 GO:0005524
Trre10g05223 573 Gene3D - 124 290 IPR027417 -
Trre10g05223 573 Gene3D - 492 571 - -
Trre10g05223 573 FunFam Replication-associated recombination protein A 127 291 - -
Trre10g05223 573 Pfam MgsA AAA+ ATPase C terminal 414 565 IPR021886 -
Trre10g05223 573 SUPERFAMILY UBA-like 3 40 IPR009060 GO:0005515
Trre10g05223 573 FunFam AAA-type ATPase family protein 292 372 - -
Trre10g05223 573 MobiDBLite consensus disorder prediction 71 116 - -
Trre10g05223 573 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 38 IPR015940 -
Trre10g05223 573 Pfam AAA C-terminal domain 326 413 IPR032423 -
Trre10g05223 573 Pfam UBA/TS-N domain 4 35 IPR015940 -
Trre10g05223 573 Gene3D - 292 373 - -
Trre10g05223 573 FunFam Putative AAA family ATPase 388 491 - -
Trre10g05223 573 Pfam ATPase family associated with various cellular activities (AAA) 174 286 IPR003959 GO:0005524|GO:0016887
Trre10g05223 573 MobiDBLite consensus disorder prediction 42 61 - -
Trre10g05223 573 MobiDBLite consensus disorder prediction 70 116 - -
Trre10g05223 573 SUPERFAMILY post-AAA+ oligomerization domain-like 398 567 IPR008921 GO:0003677|GO:0006260
Trre10g05223 573 CDD HLD_clamp_RarA 292 388 - -
Trre10g05223 573 Gene3D - 2 54 - -
Trre10g05223 573 CDD AAA 150 285 - -
Trre10g05223 573 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 134 371 IPR027417 -
Trre10g05223 573 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 1 569 - -
Trre10g05223 573 Gene3D - 388 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g05223 Trre-Chr10 59006369 59008090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g05223 136 414 Core DNA Replication Machinery Family AT1G77470 24.296 3.82e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g05223 K07478 - gmx:100799257 847.425