Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g05219 ATGGCTACACAAGCTCTAGTGTCGTCATCATCTCTTACCTTTGCAGCTGAAGCTGTGAGACAGAGTTTTGGAGCAAGATCACTCCCATCTTCTAGAAAAGGTTCCTTTGTTGTCAAGGCAACTGCTACTCCTCCCGTCAAGCAAGGTGGAGCAAATAGGCCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCTTACTTGGATGGCAGCCTTCCAGGTGACTATGGATTTGATCCTCTAGGACTTTCAGATCCAGAAGGAACAGGAGGTTTCATTGAGCCAAGATGGCTAGCATACGGCGAGATAATCAACGGTCGCTACGCAATGTTGGGAGCAGTCGGAGCAATAGCACCTGAAATCCTTGGCAAAGCCGGTTTAATTCCACAGGAAACCGCTCTGGCTTGGTTCCAAACCGGCGTGATTCCACCAGCAGGAACATACAACTACTGGGCAGACAATTACACACTGTTTGTATTGGAATTGGCACTTATGGGATTTGCAGAACATAGAAGATTCCAAGATTGGTATAACCCTGGTTCAATGGGAAAACAATACTTCTTAGGACTTGAAAAAGGTCTTGGTGGTTCTGGTGAACCAGCTTACCCAGGTGGACCTTTGTTTAACCCTCTTGGTTTTGGTAAAGATGAGAAATCATTGAAAGATTTAAAGCTTAAAGAAGTTAAGAATGGAAGATTAGCTATGTTGGCAATATTGGGTTACTTTGTTCAAGGTCTTGTTACAGGTGTTGGACCATATCAAAACCTTTTAGATCATTTGGCTGATCCTGTCAACAACAACATCTTGACCAGTCTCAAGTTCCACTAA 822 0.4367 MATQALVSSSSLTFAAEAVRQSFGARSLPSSRKGSFVVKATATPPVKQGGANRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLELALMGFAEHRRFQDWYNPGSMGKQYFLGLEKGLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNILTSLKFH 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g05219 273 Gene3D Chlorophyll a/b binding protein domain 55 272 - -
Trre10g05219 273 FunFam Chlorophyll a-b binding protein, chloroplastic 54 272 - -
Trre10g05219 273 Pfam Chlorophyll A-B binding protein 64 242 IPR022796 -
Trre10g05219 273 SUPERFAMILY Chlorophyll a-b binding protein 52 269 - -
Trre10g05219 273 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 7 268 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g05219 Trre-Chr10 58980697 58982821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g05219 1 273 Chloroplast and Mitochondria Gene Families AT1G61520 86.909 8.41e-169 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g05219 K08909 - sspl:121756224 477.633