Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g05216 ATGGCCACCACCACCACCAGCGAACAACTTCCCTGCGACGCCGACGGCGTTTGCATGGTGTGCAAAAACAAACCTCAAGAAACCGAAACTCTCAACTGCAGAACATGCGCATCACTCTGGCATGTTCCTTGTTTACCAGAAGTTCCAACAACTATCCTCGATTGGGAATGTCCCGATTGTTCTACACCTCTTCTCGTTAACGACAACTCCGTCGCCGATACTGTATCAGCGCCGGCAACGGCAACTGCTCCGTCTGTTGCCGGCGATCTCATTTCTGCTATTCGTGCCATCGAAAATGACGCTTCACTTACTGATGTAGAAAAAGCAAAGAAACGTCAAGAACTAGTTGGTGGATCTTCGAAAGCAAGTGATGAAATGAAAAATAGACGTAGTGGTGTTCTTGATATCTTCGATGGTAGCATTAACTGTTCTTTCTGTATGCAGTTGCCTGAGAGACCCGTCACTACTTCATGTGGGCACAATTTTTGCCTGAAGTGTTTTGAGAAATGGATTCAGCAAGGGAAACGAACTTGTGCGAATTGTAGGGCTGCAATTCCAGCAAAGATGGCGAGTAATCCAAGAATCAATGCACAGTTGGCAATTGGAATTCGAATGGCCAAACTAGCTAGATCAGAGAATGTTGGAGGAAGCACTGCTACAAAGGTTTATCATGTTGTTCACAATGATGAGCGTCCCGACACATGTTTTAGGACGGAGAGAGCAAAGAAAACAGGGAAGGCTAATGCTTGCAGTGGAAAAATCTTTGTGACGATTCCAAAAGATCATTTTGGACTGATCAGTGCTGAGAATGATCCAATAAGGAACCGTGGGGTTCTTGTTGGCGATACTTGGGAGGATAGGATGGAATGCAGGCAATGGGGAGCTCATTTTCCCCATGTTGCTGGCATTGCTGGTCAGAGTACTCATGGTGCTCAATCTGTTGCTCTTTCTGGGGGCTATGTTGATGATGAGGATCACGGTGAGTGGTTCTTGTATACTGGAAGTGGTGGAAGGGATTTGAGTGGGAACAAACGGACAAACAAAGATCAGTCCTTTGATCAGCAGTTTGAGAATATGAACGAGGCTTTGAGACTCAGCTGCCGAAAAGGCTATCCTGTTCGTGTTGTCAGGTCCCACAAGGAGAAACGTTCCTCTTATGCCCCGGAAGCAGGAGTGAGATATGACGGGGTTTACAGAATTGAGAAATGTTGGCGCAAAGTTGGAATGCAAGGTCATAAGGTTTGCAGGTATTTGTTTGTGAGGTGTGACAATGAGCCAGCTCCATGGACAAGTGATTTATCTGGAGACCGTCCCCGTCCACTACCTACAGTCAAGGAGTTTAAGGGTGCAGTTGATATTACTGAAAGGAAGGGTGACCCTTCGTGGGACTTTGATGAGGAAAAGGGCTGCTGGTTGTGGAAGAAGCCTCCACCACTAAGCAAGAAGCCAATGAATGTTGTAGATCCTATAGATCCAACAAAAATTCAAATTGTTAGGCCAAAGGCAAAAAAGGTGTCCTTCAAAATCAAGGATAGGCTATTGAAAGAGTTTGGTTGCAATATCTGTCGCAAGGTGTTGGCTTCCCCACTTACTACACCTTGTGCTCATAACTTCTGCAAAGGCTGCCTGGAGGGTGCCTTTTCTGGCCAAAGTTATATCAGGAACAGGGCCACTAAAAGTGGACGCAGTTTGCGGACACAAAAGAACATTATGAAATGCCCTACTTGTTCAACTGACATAGCTGATTACCTTCAGAATCCTCAGGTTAACAGGGAAATGATGGGGGTCATAGAATCACTCCAGCGTCAGGCTGAAGAGATGGATGAGGACAACTCTGAAGAATCAAGTGCGAAAAGTTCTGAAGAATCAGGTGCTAAAACTGATGAGAATCTGAAGCCGGATGAGGAGACAGACATTTCAAAACCATTGGATTCAAGTGAGAAAGTTGTGGAAGAAATTGACGAGAATGATCTGAATCCTCCTCCACAGAAGCAGAGAAAAGGTGCCAATGGCAAGACTGTGGTGAACATGGAGGAACCTGTTGATGAGGCTGAAGTGGAAAACAAAGCAGTGACTTGCAATTAG 2085 0.4566 MATTTTSEQLPCDADGVCMVCKNKPQETETLNCRTCASLWHVPCLPEVPTTILDWECPDCSTPLLVNDNSVADTVSAPATATAPSVAGDLISAIRAIENDASLTDVEKAKKRQELVGGSSKASDEMKNRRSGVLDIFDGSINCSFCMQLPERPVTTSCGHNFCLKCFEKWIQQGKRTCANCRAAIPAKMASNPRINAQLAIGIRMAKLARSENVGGSTATKVYHVVHNDERPDTCFRTERAKKTGKANACSGKIFVTIPKDHFGLISAENDPIRNRGVLVGDTWEDRMECRQWGAHFPHVAGIAGQSTHGAQSVALSGGYVDDEDHGEWFLYTGSGGRDLSGNKRTNKDQSFDQQFENMNEALRLSCRKGYPVRVVRSHKEKRSSYAPEAGVRYDGVYRIEKCWRKVGMQGHKVCRYLFVRCDNEPAPWTSDLSGDRPRPLPTVKEFKGAVDITERKGDPSWDFDEEKGCWLWKKPPPLSKKPMNVVDPIDPTKIQIVRPKAKKVSFKIKDRLLKEFGCNICRKVLASPLTTPCAHNFCKGCLEGAFSGQSYIRNRATKSGRSLRTQKNIMKCPTCSTDIADYLQNPQVNREMMGVIESLQRQAEEMDEDNSEESSAKSSEESGAKTDENLKPDEETDISKPLDSSEKVVEEIDENDLNPPPQKQRKGANGKTVVNMEEPVDEAEVENKAVTCN 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g05216 694 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 506 628 IPR013083 -
Trre10g05216 694 Gene3D - 244 438 IPR036987 -
Trre10g05216 694 ProSiteProfiles YDG domain profile. 273 421 IPR003105 -
Trre10g05216 694 ProSitePatterns Zinc finger PHD-type signature. 18 60 IPR019786 -
Trre10g05216 694 SMART G9a_1 268 425 IPR003105 -
Trre10g05216 694 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 206 IPR013083 -
Trre10g05216 694 Pfam SAD/SRA domain 276 424 IPR003105 -
Trre10g05216 694 SUPERFAMILY FYVE/PHD zinc finger 7 62 IPR011011 -
Trre10g05216 694 ProSiteProfiles Zinc finger RING-type profile. 519 577 IPR001841 -
Trre10g05216 694 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 82 IPR013083 -
Trre10g05216 694 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 3 616 IPR045134 -
Trre10g05216 694 SMART ring_2 143 181 IPR001841 -
Trre10g05216 694 SMART ring_2 18 60 IPR001841 -
Trre10g05216 694 SMART ring_2 519 576 IPR001841 -
Trre10g05216 694 SUPERFAMILY PUA domain-like 247 441 IPR015947 -
Trre10g05216 694 CDD RING-HC_ORTHRUS_rpt1 140 186 IPR047498 -
Trre10g05216 694 ProSitePatterns Zinc finger RING-type signature. 534 543 IPR017907 -
Trre10g05216 694 SUPERFAMILY RING/U-box 135 189 - -
Trre10g05216 694 MobiDBLite consensus disorder prediction 602 694 - -
Trre10g05216 694 Pfam RING-type zinc-finger 519 560 IPR027370 -
Trre10g05216 694 ProSiteProfiles Zinc finger RING-type profile. 143 182 IPR001841 -
Trre10g05216 694 Pfam Zinc finger, C3HC4 type (RING finger) 143 181 IPR018957 GO:0046872
Trre10g05216 694 MobiDBLite consensus disorder prediction 613 661 - -
Trre10g05216 694 Coils Coil 590 617 - -
Trre10g05216 694 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 244 439 - -
Trre10g05216 694 SUPERFAMILY RING/U-box 511 602 - -
Trre10g05216 694 FunFam Predicted protein 106 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g05216 Trre-Chr10 58955950 58960123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g05216 9 608 C2H2 Transcription Factor Family AT5G39550 61.120 0.0 736
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g05216 K10638 - gmx:100786796 941.414