Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g05202 ATGGCCGCCGCAGCCCGTCCCCTCGTCACCGTCCATTCTCTTGAAGGAGATATGGCCACTGACTCCCCCCCGTCAACCCTACGCCGTGATCACCGGATCGAGTCTGTTCCCGAGTTTCCACTTGTTGTCGGAGATTCTGCTGAAGGAGTTGAGAAAACAAAGGAAGCTATTAAGCTTCTGAAACATGTTGGAGCTTTCCCCGATGCCGAGAAAGCGAAAAACAGCCACGGAATTCGTCCTGGAAAAGGTAAAATGCGTAACCGTCGTTACATTTCACGTAAAGGTCCACTGATCGTTTATGGAACCGAAGGAGCGAAAGCGGTTAAAGCTTTCAGGAACATTCCCGGTGTTGAGATCACTAATGTTGAAAGGTTGAATCTATTGAAACTCGCACCTGGTGGTCATCTTGGTAGATTTGTGATTTGGACCAAAACTGCTTTCGAGAAATTGGATTCAATTTATGGGTCTTTTGATAAGGCTTCTGAGAAGAAAAAGGGTTATGTTCTTCCTAGGGCTAAGATGGTGAATTCTGATCTCACTAGGATTATTAATTCTGATGAGGTTCAGAGTGTTGTTAGTCCTGTTAAGAAGGATATTAAGAGGGCTACTTTGAAGAAGAATCCTTTGAAGAATCTCAATGTTATGCTAAGGCTTAATCCTTATGCTAAGACTGCTAAGAGGATGGCTTTGCTTGCTGAAGCTGAGAGGGTTAAGGCCAAGAAGGAGAAGCTTGACAAGAAGAGAAAGACCGTTTCCAAGGAAGAAGCTTCTGCAATCAAGGCAGCAGGAAAAGCATGGTATAATACTATGGTGTCGGATTCTGATTATACAGAATTTGATAACTTCTCCAAGTGGTTGGGCGTCTCACAGTGA 873 0.4444 MAAAARPLVTVHSLEGDMATDSPPSTLRRDHRIESVPEFPLVVGDSAEGVEKTKEAIKLLKHVGAFPDAEKAKNSHGIRPGKGKMRNRRYISRKGPLIVYGTEGAKAVKAFRNIPGVEITNVERLNLLKLAPGGHLGRFVIWTKTAFEKLDSIYGSFDKASEKKKGYVLPRAKMVNSDLTRIINSDEVQSVVSPVKKDIKRATLKKNPLKNLNVMLRLNPYAKTAKRMALLAEAERVKAKKEKLDKKRKTVSKEEASAIKAAGKAWYNTMVSDSDYTEFDNFSKWLGVSQ 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g05202 290 SUPERFAMILY Ribosomal protein L4 26 152 IPR023574 GO:0003735|GO:0005840|GO:0006412
Trre10g05202 290 Coils Coil 227 254 - -
Trre10g05202 290 Pfam Ribosomal protein L4/L1 family 41 151 IPR002136 GO:0003735|GO:0005840|GO:0006412
Trre10g05202 290 Pfam 60S ribosomal protein L4 C-terminal domain 165 237 IPR025755 -
Trre10g05202 290 Gene3D - 18 193 IPR023574 GO:0003735|GO:0005840|GO:0006412
Trre10g05202 290 PANTHER 60S RIBOSOMAL PROTEIN L4 23 283 IPR045240 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g05202 Trre-Chr10 58852963 58855200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g05202 19 290 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 81.250 2.94e-153 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g05202 K02930 - gmx:100779764 466.463