Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g05194 ATGATTGAGAAAATGGAGAAGGAGGAAGCAAAGCAAGTAACTGATGAAGAAGCTTTTCTTTTTGCAATGGAACTAGTTGGTGCTTCAGCTGTTCCAATGGTTCTAAAATCAGCTTTGGATATTGGCATAATTGAAATTATAGCCAAAGCTGGTCCTAATGCTTATCTTTCATCTTCTAACATTGCTTCTCAAATACCTTCCATAAAAAACAAAGATGCACCTTCTATGTTGGACCGTTTGTTGCGTCTCTTGGCTAGCTACAAAATCCTTACTTGTTCTATTGATCAACATCAAGATCAAATAAGACTCTATGGTCTTCACCCTTTTGCTAAATATTTTGTCAATAATAGTGATCAAGGTGGTGTCTCCATGATTTCTTCTTTTCTCATGCATCACGACAAAGTCCTCCAAGACTTGTGGTACCACTTGACAGAATCAATTCAGGAGGGTGGCCTTCCATTTTACAATGCTTATGGAATGACGGTATTTGAATTCCAGGGCAACAATCCAAGGTTCAACAAGCTTTTCAACAATGGCATGTCCAATGTCTCTGGCATTATAATGAAGAAAATTCTTGAGACCTATCCAGGTTTTGAGGGTCTTGAATCTTTTGCCGATGTTGGTGGTGGGACTGGAACTATAAGTAACATGATTGTATCTAAGTATCCCAACATTAAAGCTATTAATTTTGACTTGCCCCATGTGATTAACGAAGCACCATCTTATCCAGGTGTGGAGCATGTTGGTGGAGACATGTTTGTAAATGTTCCAAAAGCTGATGCTATTTTCATGAAGTGGGTATTACATGATTGGAATGAAGAGCAATGCTTGAAAATTTTGAAGAATTGTTATGATTCACTTCCAGACACAGGAAAGGAAATAAAGAGAATACTTGTAGTGATTGTGGCTGAATGCATTGTTCCAACAGTTCCAGACTCAAACTTAGCCTCAAAATCTGTGGTTCAAATGGATGTTATCATGTTGTGTCATAGCTCAGGTGGAAAAGAGAGAACAGAGAAAGAGTTTGAGGCTTTGGCTAAAGGAGCTGGATTTCAAGGATTCAAAATTGCATCTTGTGCTTTGAACATGTATGTCATGGAATTTCTTAAGAATGCTTAA 1119 0.3789 MIEKMEKEEAKQVTDEEAFLFAMELVGASAVPMVLKSALDIGIIEIIAKAGPNAYLSSSNIASQIPSIKNKDAPSMLDRLLRLLASYKILTCSIDQHQDQIRLYGLHPFAKYFVNNSDQGGVSMISSFLMHHDKVLQDLWYHLTESIQEGGLPFYNAYGMTVFEFQGNNPRFNKLFNNGMSNVSGIIMKKILETYPGFEGLESFADVGGGTGTISNMIVSKYPNIKAINFDLPHVINEAPSYPGVEHVGGDMFVNVPKADAIFMKWVLHDWNEEQCLKILKNCYDSLPDTGKEIKRILVVIVAECIVPTVPDSNLASKSVVQMDVIMLCHSSGGKERTEKEFEALAKGAGFQGFKIASCALNMYVMEFLKNA 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g05194 372 FunFam Caffeic acid O-methyltransferase 116 370 - -
Trre10g05194 372 CDD AdoMet_MTases 204 305 - -
Trre10g05194 372 Gene3D - 2 113 IPR036388 -
Trre10g05194 372 FunFam Caffeic acid 3-O-methyltransferase 2 113 - -
Trre10g05194 372 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 23 370 IPR016461 GO:0008168
Trre10g05194 372 PANTHER O-METHYLTRANSFERASE 23 353 IPR016461 GO:0008168
Trre10g05194 372 SUPERFAMILY "Winged helix" DNA-binding domain 15 116 IPR036390 -
Trre10g05194 372 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 121 367 IPR029063 -
Trre10g05194 372 Gene3D Vaccinia Virus protein VP39 116 370 IPR029063 -
Trre10g05194 372 Pfam O-methyltransferase domain 140 352 IPR001077 GO:0008171
Trre10g05194 372 PIRSF O-mtase 1 370 IPR016461 GO:0008168
Trre10g05194 372 Pfam Dimerisation domain 33 85 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g05194 Trre-Chr10 58797878 58802819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g05194 12 370 Monolignol Biosynthesis Gene Families AT5G54160 60.111 1.20e-156 443
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g05194 K13066 - gmx:100780100 474.552