Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g05179 ATGCAATCAGATAATGGCAAGTTATTTATTGGTGGAATATCGTGGGACACAAATGAAGAACGACTCAGGGAGTATTTCAGTAACTATGGTGAGGTTAAGGAAGCAGTGATAATGAAGGATCGTACAACTGGTAGAGCCCGTGGATTTGGTTTTGTTGTTTTCATTGACCCAGCTGTTGCTGAAATTGTCATCAAAGAGAAGCACAACATCGATGGAAGGATGGTTGAGGCGAAGAAAGCTGTTCCTCGGGATGATCAGAATGTATTGAGTAGAACTAGTGGCAGCATCCAAGGTTCTCCTGGTCCAGGTCGCACAAGAAAGATATTTGTTGGAGGTTTAGCTTCTACAGTGACGGAGAGTGATTTCAAGAAGTACTTTGATCAGTTTGGGACTATAACAGATGTTGTAGTAATGTATGATCACAACACTCAAAGGCCACGAGGCTTTGGGTTTATCACTTATGATTCCGAAGAGGCTGTTGACCAGGTCTTACTTAAGACGTTTCATGAATTGAACGGTAAAATGGTTGAGGTCAAGCGAGCAGTTCCTAAGGAGTTATCGCCAGGACCTACCCGCTCTCCTCTCAGCGGATACAACTATGGTCTGAGTAGGGTCAATAGTTTCTTGAATGGCTTCAGTCAGGGGTACAGTCCAAGTACTGTTGGAGGCTATGGACTTCGGATGGATGGTAGGTTCAGTCCGGTTGCTAGTGGTCGCAATGCATTTGCGCCATTTGGTTCTGCTTATGGAATGGGTATGAATTTCGAGCCTGGTTTGAGTCCTGGATTTGGAGGTAATGCAAATTTCAATGGAAATCTTAGCTATGGGCGGGGCTTAAATCCGTACTTCATTGGCAGCTCCAATAGGTTTGGCAGTCCTGTTGGATATGAAAGTGGTAATGGAGGAAACAATTCCTTCTTCAGTTCCGTGACTCGAAATTTGTGGGGGAATGGAAGCCTTAACTATGGAACAAATTCTGCAAATTCCAGTGCATACATTGGATCAGGGAGTGGGAATGTTGGAGGAAATGCATTCGGCAATACTGGAGTCAACTGGAGTTCTTCCCCGATTTCTGGACACGGGGGAGGGAACAATGTGTCACAGGGTAGTGGCAACCTTGGATATGGAGGTGGCAACAACGGTTATGGATTAGGGACCGAAGGGTATGGAAGAAGCGGTGGTTCCACTCTTGCACCAACATCTTCATACTCTGCATCAAATGGTGGTGGTGTTGATGGTGCTTTTGCTGATTTTTACAACAATAATTCGGTCTATGGGGACACCACTTGGCGATCTTCGAATTCTGAGAGAGATGGATCTGGTCCCTTTGGTTACGGACTTGGTGGTGCAGCTTCAGATGTTTCTGCCAAGACTTCTCCTGGTTATGTTGGTGGTTATACTGTTAATAAAAGGCAGCCAAATAGGGGTAAGAGCGACATTTCTTACTCATACTTATCTCAACTTCTCAGTCAATCAGCATAA 1482 0.4487 MQSDNGKLFIGGISWDTNEERLREYFSNYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVAEIVIKEKHNIDGRMVEAKKAVPRDDQNVLSRTSGSIQGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGKMVEVKRAVPKELSPGPTRSPLSGYNYGLSRVNSFLNGFSQGYSPSTVGGYGLRMDGRFSPVASGRNAFAPFGSAYGMGMNFEPGLSPGFGGNANFNGNLSYGRGLNPYFIGSSNRFGSPVGYESGNGGNNSFFSSVTRNLWGNGSLNYGTNSANSSAYIGSGSGNVGGNAFGNTGVNWSSSPISGHGGGNNVSQGSGNLGYGGGNNGYGLGTEGYGRSGGSTLAPTSSYSASNGGGVDGAFADFYNNNSVYGDTTWRSSNSERDGSGPFGYGLGGAASDVSAKTSPGYVGGYTVNKRQPNRGKSDISYSYLSQLLSQSA 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g05179 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Trre10g05179 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 69 IPR000504 GO:0003723
Trre10g05179 493 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Trre10g05179 493 SMART rrm1_1 7 78 IPR000504 GO:0003723
Trre10g05179 493 SMART rrm1_1 107 179 IPR000504 GO:0003723
Trre10g05179 493 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 475 - -
Trre10g05179 493 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Trre10g05179 493 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Trre10g05179 493 CDD RRM2_Hrp1p 107 184 - -
Trre10g05179 493 SUPERFAMILY RNA-binding domain, RBD 3 104 IPR035979 GO:0003676
Trre10g05179 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Trre10g05179 493 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
Trre10g05179 493 Gene3D - 4 88 IPR012677 -
Trre10g05179 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Trre10g05179 493 Gene3D - 103 189 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g05179 Trre-Chr10 58694742 58696806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g05179 8 281 Eukaryotic Initiation Factors Gene Family AT1G71770 28.025 2.94e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g05179 K14411 - gmx:100795907 818.15