Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g05178 ATGCCTGCTGAAAATTGGGACGGTGAAATAGAAGCATTTGCAGAAATCGATCCAACAGGTAGATTCGGTCGTTACAATGATTTACTCGGTTATGGAGCTGTGAAAAAAGTTTACAGAGGTTTTGATCAAGAAGAAGGAATTGAAGTTGCATGGAATCAAGTTAAACTTAGGAATTTCAGCGACGATCCTGTTCTTATTAATCGTCTTCATTCTGAAGTTGAATTGCTAAGAAATCTTAGTAACAAATATATCATTGTTTGTTATAGTGTTTGGAAAGATGATGAACATGGTAATATCAATTTTATTACTGAGGTTTGTACTTCTGGAAATCTTAGGGATTATAGGAAGAAACATCGTCATGTTTCGATTAAAGCGTTTAAGAAATGGTCGAAACAAGTTCTTGAAGGATTGGAGTATCTTCATACACATGATCCTTGCATTATTCATAGAGATCTTAATTGCAGTAATATCTTTGTTAATGGGAACATTGGACAGGTGAAAATTGGTGATCTGGGATTGGCTGCAATAGTGGGAAGGAGCCATGCAGCACATTCAATTTTAGGGACTCCTGAGTATATGGCACCTGAGCTGTATGAGGAAGATTACACTGAGATGGTGGACATTTACTCTTTTGGAATGTGTTTGCTTGAAATGGTTACAATGGAGATACCATACAGTGAATGTGACAATGTAGCAAAGATATACAGAAAAGTCACAATGGGAATTAAGCCTCAAGCCTTAGGCAATGTCAGAGATCCAGAAGTGAAAGCATTCATTGAAAAATGCATTGCTCAGCCAAGGGCAAGACCTTCAGCCACTGATCTTCTTAAGGATCCTTTCTTTTCTGAACTCAACAATGATGAAGAATCAACATCTATCAGTACTTGA 888 0.3716 MPAENWDGEIEAFAEIDPTGRFGRYNDLLGYGAVKKVYRGFDQEEGIEVAWNQVKLRNFSDDPVLINRLHSEVELLRNLSNKYIIVCYSVWKDDEHGNINFITEVCTSGNLRDYRKKHRHVSIKAFKKWSKQVLEGLEYLHTHDPCIIHRDLNCSNIFVNGNIGQVKIGDLGLAAIVGRSHAAHSILGTPEYMAPELYEEDYTEMVDIYSFGMCLLEMVTMEIPYSECDNVAKIYRKVTMGIKPQALGNVRDPEVKAFIEKCIAQPRARPSATDLLKDPFFSELNNDEESTSIST 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g05178 295 Gene3D Phosphorylase Kinase; domain 1 8 104 - -
Trre10g05178 295 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g05178 295 Gene3D Transferase(Phosphotransferase) domain 1 106 287 - -
Trre10g05178 295 SUPERFAMILY Protein kinase-like (PK-like) 17 281 IPR011009 -
Trre10g05178 295 CDD STKc_WNK 21 281 - -
Trre10g05178 295 ProSiteProfiles Protein kinase domain profile. 23 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g05178 295 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 9 285 - -
Trre10g05178 295 FunFam probable serine/threonine-protein kinase WNK9 106 287 - -
Trre10g05178 295 FunFam Probable serine/threonine-protein kinase WNK1 8 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g05178 Trre-Chr10 58688380 58690525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g05178 7 281 MAP Kinase Kinase Kinase AT5G55560 76.727 6.03e-168 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Trre10g05178 Pkinase 1.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g05178 K08867 - gmx:100798280 548.51