Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g05176 ATGCATAAATCGTCTTTGTGTCGTAAAAGACCACACGAGTCCTCTTTGGCTAATGTGGAAGGTCAAGATCAATCATATGGTGCCAATAGAGTTGGCGCGTCAACTAATGAATACTGCCGTGTTGTTGAGTCTAAAAGTGAAAATGAAGCTGACGGATATAAATGGCGCAAATATGGGCGGAAACCAATTAAAGGGAACGAACATCGAAGACATTACTATCGATGTACGAATGCTGGATGTCCAGCCATAAAGAATGTTCAAAAATCCTCTTGTGATTCAACAAAGTTCATAATTACGTACAAGAGACAACATGATCACAGTGGAAGTGGTATCCCTCAGAAGCTGGAAGACAAATATGAAGATATTGTTTGGGATAATGTGATTTTATTTCGAGCTATTATCATTCCAAACCAAGATCTTAAAATTGATTTAAACATTCCAAACCAGGATCTTGAAATTGATTTAAATGATGAAGAGCTACAAAATGAACATCCTGGTACACCATCTGATGCAGAACCAATATCTTGA 528 0.375 MHKSSLCRKRPHESSLANVEGQDQSYGANRVGASTNEYCRVVESKSENEADGYKWRKYGRKPIKGNEHRRHYYRCTNAGCPAIKNVQKSSCDSTKFIITYKRQHDHSGSGIPQKLEDKYEDIVWDNVILFRAIIIPNQDLKIDLNIPNQDLEIDLNDEELQNEHPGTPSDAEPIS 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g05176 175 ProSiteProfiles WRKY domain profile. 44 109 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre10g05176 175 Gene3D WRKY domain 34 108 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre10g05176 175 MobiDBLite consensus disorder prediction 1 29 - -
Trre10g05176 175 SMART WRKY_cls 49 108 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre10g05176 175 Pfam WRKY DNA -binding domain 51 106 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre10g05176 175 SUPERFAMILY WRKY DNA-binding domain 46 107 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre10g05176 175 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 40 113 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g05176 Trre-Chr10 58674779 58675944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g05176 51 84 WRKY Transcription Factor Family AT4G30935 55.882 2.27e-06 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre10g05176 WRKY 2e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g05176 - K18834 gmx:100782726 87.0409