Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g05175 ATGAGTAATCACCGAAGATTTAAACACAAACAACATTTGAAGGGCTATTTCTCATCATTCATTATTCTATATGCCACTATCACATTTTCTTCATCAAAATACCATTCTTTTGCTCTCTTTGATTCTACTCCACTGTGGTTGGTTTTCCTTCCTCCAAAACAAATTACAGATAATCTCAAATCTGCTCAGAAGAATGAACTTGCAGTTGAGACGTCGGTAAGATTCTTCATAACTGATTCTACGATGCAGGCATCGGAGCAACATAGAAGTTCGAGTATGTACTATCAACCGTTGCAACAAATTGAAGCCTATTGCTTACCGCAGTATCGAAATCTAAATCATCAGCTATACAACAATGATGGAGGCCACGGAACTCAATTATCGGCTCCAACTTCGTCTGACCTTTATTATTGCACCTTGGAGTCGTCGTCTGCAGCTGGAAGTGTTGCTGTTTACAACTCTCCTTCAACTGTTAGTTTCTCGCCTAACGATAGTCCAATGTCGCAGCAAGATTCACAGTCATATCCACCTGATAAGTATCATTCCCCCGACAATACCTATGGCTCTCCAATGAGTGGGTCGTGCATAACCGAAGATTTAAGTAGTTTTAAGCACAAGCTGAGAGAATTGGAAAATGTAATGCTTGGTCCTGACTCTGATAATCTTGATAGTTACGACAGTGCCATGAGCAACGGAACCAATTTCGTTTCGCTTGAAATGGACAGTTGGAGACAAACAATGGTAGCGATTTCGAGCAAAAATCTAAAGCATATCCTTACTGCATGTGCCAAAGCAATTGCAGACAATGATTATCTAATGGCACAGTGGCTGATGGACGAATTACGGCAGATGGTGTCGGTTTCTGGAGAACCGATTCAAAGGTTAGGAGCATACATGTTGGAAGGACTCGTTGCACGGTTGTCTGCTTCTGGGAGTTCAATCTACAAATCATTAAGATGCAAAGAACCAGAAAGTGCCGAGCTTCTCTCTTACATGAACATACTTTATGAGGTTTGCCCTTACTTCAAATTCGGATACATGTCTGCAAACGGAGCCATTGCAGAAGCAATGAAAAATGAAGCCAGAGTTCATATTATTGATTTCCAAATAGCTCAAGGAAGCCAATGGATTTCTTTGATTCAAGCTTTTGCAGCTAGGCCTGGTGGGCCACCGCACATCCGTATTACAGGTATCGATGATTCAACCTCAGCTTATGCCCGTGGAGGTGGACTACATATAGTTGAAAAGAGGTTATCAAAGCTTGCTCAGCATTTCAAGGTTCCATTTGAATTTCATGCCGCAGCTATCTCCGGTTGTGATGTTCAACTGCATAACCTCGGAGTTCGACCTGGGGAAGCTCTTGCAGTAAATTTTGCATTCATGCTACATCACATGCCTGATGAGAGTGTCAGCACTCAGAATCATAGGGATAGGCTTCTGAGGTTAGTTAAAAGCCTATCACCAAAAGTCGTGACACTTGTCGAGCAAGAATCTAACACAAACACTGCGGCATTCTTTCCGCGTTTCCTTGAAACTATGGACTATTACACGGCAATGTTCGAGTCAATAGACGTGACTCTCCCGAGAGAGCATAAAGAGAGAATTAATGTTGAGCAGCATTGCTTGGCAAGAGACTTAGTTAACATCATAGCTTGTGAGGGGGTAGAGAGAGTGGAACGACACGAACTGCTAGGGAAATGGAGATCAAGATTTGCAATGGCTGGTTTCACTCCTTACCCTCTGAGTTCATTGGTGAATGGTACCATAAAGAAATTGCTTGAGAATTACAGTGATAGATATAGACTACAAGAGAGAGATGGAGCTTTATACCTTGGTTGGATGAATAGAGATTTGGTTGCTTCTTGTGCTTGGAAATGA 1878 0.4207 MSNHRRFKHKQHLKGYFSSFIILYATITFSSSKYHSFALFDSTPLWLVFLPPKQITDNLKSAQKNELAVETSVRFFITDSTMQASEQHRSSSMYYQPLQQIEAYCLPQYRNLNHQLYNNDGGHGTQLSAPTSSDLYYCTLESSSAAGSVAVYNSPSTVSFSPNDSPMSQQDSQSYPPDKYHSPDNTYGSPMSGSCITEDLSSFKHKLRELENVMLGPDSDNLDSYDSAMSNGTNFVSLEMDSWRQTMVAISSKNLKHILTACAKAIADNDYLMAQWLMDELRQMVSVSGEPIQRLGAYMLEGLVARLSASGSSIYKSLRCKEPESAELLSYMNILYEVCPYFKFGYMSANGAIAEAMKNEARVHIIDFQIAQGSQWISLIQAFAARPGGPPHIRITGIDDSTSAYARGGGLHIVEKRLSKLAQHFKVPFEFHAAAISGCDVQLHNLGVRPGEALAVNFAFMLHHMPDESVSTQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAAFFPRFLETMDYYTAMFESIDVTLPREHKERINVEQHCLARDLVNIIACEGVERVERHELLGKWRSRFAMAGFTPYPLSSLVNGTIKKLLENYSDRYRLQERDGALYLGWMNRDLVASCAWK 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g05175 625 Pfam GRAS domain family 255 625 IPR005202 -
Trre10g05175 625 ProSiteProfiles GRAS family profile. 246 625 IPR005202 -
Trre10g05175 625 MobiDBLite consensus disorder prediction 157 188 - -
Trre10g05175 625 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 211 619 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g05175 Trre-Chr10 58668816 58672668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g05175 93 625 GRAS Transcription Factor Family AT5G48150 65.619 0.0 699
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre10g05175 GRAS 2.6e-136 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g05175 - - gmx:100796496 1003.82