LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre10g05165	ATGCTCCCTCCGCGACAACAGTCCCGGGTTGGAGGTCTGCAAACATCACTGTCTCTGGTTTCTTCGGATCCTCGCTTGTCTCCAGAGGATCCTAGGTCACACTCTGATAACCTCCGGGAATCTCCTACTGAAAGTGCTAGCTCTAGAGAAACCTGGCCTACTGCTGATGCAATTGCTGCAAAGAAGATGGAGAATGGAAAAGCTGATATTGATTGTCCAGATCAGTCAGTTATTCGTCGTGTTTCTAGTGCCGATAGAATTAGTCTTCAGGATATTGCTAGAGAAAGAGTGGATGTGATATGTGACAAAATGCATCGTCTACCTGAAGAGTTTCTAGATGAGCTGAAAAATGGGCTTCGAGTTATACTTGAGGGAGGAAATGGTTCACAGCATAGAGACGAGTTTTTCATTTTGCAGAAGCATGTTCAGAGTAGATCTGATTTAACAGCCAAAACATTGATTCGAGCACATCGAACACAGCTTGAAATCCTTGTTTCCATAAATACTGGAATTCAGGGATTTTTACATCCTAGCATCAGTCTGTCGCAGACAACGCTGATTGAGGTATTTCTGTACAAGAGATGCAGAAACATAGCTTGCCGAAACTTGCTTCCAGCTGATGATTGTTCTTGTGAAACCTGCACTAACAACAATGGCTTCTGCAATCTTTGCATGTGTGTTATCTGCAGCAAGTTTGACTTTGAAGTAAATACTTGCCGTTGGATTGGATGCGATTTGTGTTCTCACTGGACTCACACAGATTGTGCCATTCGGGAGCAACTTATCTGCATGGGTCCTTCTGTAAAGAGTGGATCAGGGCCAAGTGAAATGGTTTTCAGGTGTCAAGCATGCAATAGGACTTCAGAACTGTTGGGCTGGGTTAAAGATGTCTTCCAGCACTGTGCACCATCATGGGATGGGGAGGCCTTGATGAGGGAGCTTGATTTTGTTAGTAGGATCTTTCATGGTAGTAAAGACCAACGGGGGATGAAACTCTTTTGGAAGTGTGATGATCTCAAGGAAAAACTGAAAAGTAGAAAAATGGAAGCTAAAGCAGCATGCAGAGCAATATTGTTGGTTTTCCAAGAGCTTGACCTGGATTCCCCAAAGAGCCTGGAAAATGCAGAAAGTGGAAGGCTGATTGCTCCACAGGAGGCATGCAATAGAATTGCTGAAGTGGTGCAGGAGGCTATACGAAAGATGGAATTTGTAGCTGATGAGAAGAAGAGAATGCACAAGAAGGCTCGCTTAGCTGTTGAGGCTTGTGATCGTGAATTAGCAGACAAAGCCAGAGAAGCAGGAGAACTCAAGATGGAGAGGCAAAAAAAGAAGTCACAGATTGAAGAACTAGAGAGAATTGTGAGGCTTAAAAATGCAGAGGCTGATATGTTCCAGTTGAAGGCTAATGAGGCCAAACGAGAGGCTGAAAGGCTCCAGAGGATTGCTCTTGCCAAGTCTGATAAATCGGAGGAAGAATATACCAGCAACTATTTGAAACAGAAGTTAAGTGAGGCTGAGGCCGAGAAGCAATATCTCTATGAGAAAATCAAATTGCAGGAGAGTTCTCGTTTATCACAGAGCAGTGGTGACCCCTCTTCAATGCTGATGTATTCCAAAATCCATGATCTTCTATACAATGGCCCTCCCAAGGCAGACAGTCAATCTAACGACTGCCACCCTTTCCGCACAAACCCATGA	1698	0.4423	MLPPRQQSRVGGLQTSLSLVSSDPRLSPEDPRSHSDNLRESPTESASSRETWPTADAIAAKKMENGKADIDCPDQSVIRRVSSADRISLQDIARERVDVICDKMHRLPEEFLDELKNGLRVILEGGNGSQHRDEFFILQKHVQSRSDLTAKTLIRAHRTQLEILVSINTGIQGFLHPSISLSQTTLIEVFLYKRCRNIACRNLLPADDCSCETCTNNNGFCNLCMCVICSKFDFEVNTCRWIGCDLCSHWTHTDCAIREQLICMGPSVKSGSGPSEMVFRCQACNRTSELLGWVKDVFQHCAPSWDGEALMRELDFVSRIFHGSKDQRGMKLFWKCDDLKEKLKSRKMEAKAACRAILLVFQELDLDSPKSLENAESGRLIAPQEACNRIAEVVQEAIRKMEFVADEKKRMHKKARLAVEACDRELADKAREAGELKMERQKKKSQIEELERIVRLKNAEADMFQLKANEAKREAERLQRIALAKSDKSEEEYTSNYLKQKLSEAEAEKQYLYEKIKLQESSRLSQSSGDPSSMLMYSKIHDLLYNGPPKADSQSNDCHPFRTNP	565

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre10g05165	565	Pfam	PHD - plant homeodomain finger protein	195	318	IPR032881	-
	Trre10g05165	565	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	232	252	IPR004082	-
	Trre10g05165	565	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	305	324	IPR004082	-
	Trre10g05165	565	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	160	175	IPR004082	-
	Trre10g05165	565	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	145	160	IPR004082	-
	Trre10g05165	565	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	448	468	IPR004082	-
	Trre10g05165	565	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	487	509	IPR004082	-
	Trre10g05165	565	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	186	207	IPR004082	-
	Trre10g05165	565	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	103	125	IPR004082	-
	Trre10g05165	565	MobiDBLite	consensus disorder prediction	1	52	-	-
	Trre10g05165	565	SMART	PHD_3	225	285	IPR001965	-
	Trre10g05165	565	Coils	Coil	433	488	-	-
	Trre10g05165	565	MobiDBLite	consensus disorder prediction	545	565	-	-
	Trre10g05165	565	MobiDBLite	consensus disorder prediction	1	23	-	-
	Trre10g05165	565	PANTHER	VERNALIZATION-INSENSITIVE PROTEIN 3	27	546	IPR004082	-
	Trre10g05165	565	MobiDBLite	consensus disorder prediction	549	565	-	-
	Trre10g05165	565	PIRSF	UCP025218	1	550	-	-
	Trre10g05165	565	CDD	PHD_OBE1_like	225	284	IPR047578	-
	Trre10g05165	565	Pfam	Coiled-coil region of Oberon	413	544	IPR032535	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre10g05165	Trre-Chr10	58622976	58625109	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre10g05165	195	297	PHD Gene Family	AT5G57380	32.692	2.34e-09	58.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre10g05165	-		-	gmx:100795450	1039.25