Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g05164 ATGCATATGCTACTAAAGGACCAAATATTGTCTCACATCCAAGGTACCAAACTACCCGAGGTATACTGCAATACATACAGACAGGTTGATCCTCCTGCCCATTCAAGTATGAGGCATCTTTTTGGGACTTGGAGAGGAGTCTTTCCTCCTCAGACCCTTCAGATAATTGAGAAGGAACTCGGCTTCAGTCCAGCAGTCAATGGCATTCATGTGAATCTCAAATATGCCGCCCTTAGAAAAAGGCAACGCCTTCAGCAGTCCAACATGGGAGTATTTAATGATATGACTGGAGTTATTTCAAACTCAAATGAGGACCTAGAGAGGCCAGATAGAGCTTTGGGTGCTGCACGACTATGGCTGGATCCTAGGATTAACATGCATAATAATCAGCGTCCTCAGATAAATGCATTTAACGATTATGTTCCTGACAAGAGCATTGGCGCGCGGTGCCTACGGAGACAATGA 465 0.4473 MHMLLKDQILSHIQGTKLPEVYCNTYRQVDPPAHSSMRHLFGTWRGVFPPQTLQIIEKELGFSPAVNGIHVNLKYAALRKRQRLQQSNMGVFNDMTGVISNSNEDLERPDRALGAARLWLDPRINMHNNQRPQINAFNDYVPDKSIGARCLRRQ 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g05164 154 Gene3D - 5 61 IPR008942 -
Trre10g05164 154 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 16 145 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Trre10g05164 154 SUPERFAMILY ENTH/VHS domain 16 64 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g05164 Trre-Chr10 58616614 58619039 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g05164 16 75 C2H2 Transcription Factor Family AT4G04885 48.649 6.89e-16 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g05164 K14400 - gmx:102662278 177.563