Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g05159 ATGGCCACCTCTGCTATCCAACAATCAGCATTCACTGGTAAGACTGGTTTGAGACAAGGAAATGAGTTCATCAGGAAAGCTGGTAACTTTGGCCCAAGTCGCTTCACCATGCGTCGTACCGTGAAGAGTGCTCCTGAAAGCATTTGGTATGGCCCTGACAGACCCAAGTACTTGGGTCCATTCTCAGAACAAATTCCATCATACCTGACTGGTGAATTTCCTGGTGACTATGGATGGGACACAGCTGGATTATCAGCTGACCCTGAAACTTTTGCAAAGAACCGTGAGCTTGAAGTAATTCACAGCAGATGGGCTATGCTTGGAGCATTGGGATGTACCTTCCCTGAAATCCTTGAAAAGAACGGTGTTAAATTCGGCGAGGCAGTCTGGTTTAAGGCTGGTGCCCAGATCTTCTCTGAGGGTGGCCTTGACTATTTGGGCAACCCAAACTTGATCCATGCTCAGAGCATTCTTGCAATCTGGGCTACTCAGGTTGTGCTCATGGGATTTGTTGAAGGTTACAGAATCGGTGGAGGACCTCTTGGTGAAGGACTAGACCCACTTTACCCTGGTGGTGCCTTTGACCCTCTTGGTCTTGCTGATGACCCTGATGCATTTGCAGAGTTGAAGGTGAAGGAACTCAAGAACGGCCGATTGGCTATGTTCTCCATGTTTGGTTTCTTTGTTCAAGCCATCGTTACCGGCAAGGGACCTGTTCAGAACCTTTACGACCATCTTGCTGACCCTGTCGCCAACAACGCATGGGCATATGCTACTAACTTCGTCCCCGGACAATAA 798 0.4862 MATSAIQQSAFTGKTGLRQGNEFIRKAGNFGPSRFTMRRTVKSAPESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILEKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVQNLYDHLADPVANNAWAYATNFVPGQ 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g05159 265 FunFam Chlorophyll a-b binding protein, chloroplastic 56 258 - -
Trre10g05159 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Trre10g05159 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 7 264 IPR001344 GO:0009765|GO:0016020
Trre10g05159 265 Pfam Chlorophyll A-B binding protein 66 231 IPR022796 -
Trre10g05159 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g05159 Trre-Chr10 58577672 58578939 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g05159 1 265 Chloroplast and Mitochondria Gene Families AT2G05070 86.792 2.34e-176 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g05159 K08913 - gmx:100815789 509.605