LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre10g05158	ATGTTGCTGACTTGTGCATATCCTAATCCACAAAATCTAATTATTTCCACCGTGGCCACTCTCAACACTTCTATAAACCTTTGTAGCATTTCCTTCATTCTTCACAACAACACTAGCAAGCTATTAACACTAAAGAGAACAACAGCAAGAAGCCTCAAAGCCCTCATGGCCACCTCTGCTATCCAACAATCAGCATTCACTGGTAAGACTGGTTTGAGACAAGGAAATGAGTTCATCAGGAAAGCTGGTAACTTTGGCCCAAGTCGCTTCACCATGCGTCGTACCGTGAAGAGTGCTCCTGAAAGCATTTGGTATGGCCCTGACAGACCCAAGTACTTGGGTCCATTCTCAGAACAAATTCCATCATACCTGACTGGTGAATTTCCTGGTGACTATGGATGGGACACAGCTGGATTATCAGCTGACCCTGAAACTTTTGCAAAGAACCGTGAGCTTGAAGTAATTCACAGCAGATGGGCTATGCTTGGAGCATTGGGATGTACCTTCCCTGAAATCCTTGAAAAGAACGGTGTTAAATTCGGCGAGGCAGTCTGGTTTAAGGCTGGTGCCCAGATCTTCTCTGAGGGTGGCCTTGACTATTTGGGCAACCCAAACTTGATCCATGCTCAGAGCATTCTTGCAATCTGGGCTACTCAGGTTGTGCTCATGGGATTTGTTGAAGGTTACAGAATCGGTGGAGGACCTCTTGGTGAAGGACTAGACCCACTTTACCCTGGTGGTGCCTTTGACCCTCTTGGTCTTGCTGATGACCCTGATGCATTTGCAGAGTTGAAGGTGAAGGAACTCAAGAACGGCCGATTGGCTATGTTCTCCATGTTTGGTTTCTTTGTTCAAGCCATCGTTACCGGCAAGGGACCTGTTCAGAACCTTTACGACCATCTTGCTGACCCTGTCGCCAACAACGCATGGGCATATGCTACTAACTTCGTCCCCGGACAATAA	963	0.4704	MLLTCAYPNPQNLIISTVATLNTSINLCSISFILHNNTSKLLTLKRTTARSLKALMATSAIQQSAFTGKTGLRQGNEFIRKAGNFGPSRFTMRRTVKSAPESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILEKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVQNLYDHLADPVANNAWAYATNFVPGQ	320

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre10g05158	320	FunFam	Chlorophyll a-b binding protein, chloroplastic	111	313	-	-
	Trre10g05158	320	SUPERFAMILY	Chlorophyll a-b binding protein	103	317	-	-
	Trre10g05158	320	Pfam	Chlorophyll A-B binding protein	121	286	IPR022796	-
	Trre10g05158	320	Gene3D	Chlorophyll a/b binding protein domain	111	313	-	-
	Trre10g05158	320	PANTHER	CHLOROPHYLL A/B BINDING PROTEIN	58	319	IPR001344	GO:0009765\|GO:0016020

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre10g05158	Trre-Chr10	58577507	58578939	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre10g05158	56	320	Chloroplast and Mitochondria Gene Families	AT2G05070	86.792	5.96e-177	488

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre10g05158	K08913		-	gmx:100815789	509.605