Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g05157 ATGTCCTCAGAATCAGAAAGTGCCAACATAGAACTTGGTGCTAGCTTACTTATTACTACTACTAGCAGTAGCAGTAGCAAGTACAGCAAGAAATGGCGTAAAAGCTTGTACATAGGATTCCTCATCTCCTTGAAGAAGCCTACAACTTCTAGTGACCCCTATGAAGAATCTACATCACCATTTTCTTCGGCACCATACACTTCATTGCCTCCGGCAAGAAGCTCCTCTGCCAAATCTTTTGTTTCGATTGATATAGTCTCTCATGTCCAAGAGGAGGATGGAGAAGAAGAAGGGGACGGTGTAGTAGAACAACCGGTTAGGGATGATATTGCTAGAATTGTGAAGGAGAAGGACTTGAAATCTCTTCTTGAGCTTGGTGGAGTTGGAAGAGTTTGTAATGTTCTTCAAGCTCAAAGTCAACACTCTAATGAGCAAATCATTGGGAACTTTGGAACAAGTTTCTCTAGCATTCTATGGAATAGCTGCAAGCACAATCGTTACACAATTTCATTGATGCTGATTTCAGCCTCATTGTCCTTTGCCATGGAGCTCAAGCAGGAGGGACCTAGATATGGTTGGCATGATGGTGTTGCTATGGTTTTTGTTGTTCTACTTATGATTGCATTCTCTTCAATAACTAACTTTCGGCGCGAACGAAAAATGGTGAAGTTGGCAAAGAGAAAAGCCCAGGAGGCGAAGTTCAATGTTAAAAGAGGTGAACATGATCGTGTTCTTCCCGTATACGATATTGTGGTCGGTGACATGCTTTGTTTGAGTCCCCATGATGAGGTTCCTGCTGATGGTTTGCTTGTGAGTGGCGACGTCCTTGTGCTGACTTGTGGAATGAAAAATGAAAAAATTGATTGTGTGGAAAACCCATTTCTTATAGCTGGTTCAAAGGTGATTGAGGGTCATGGACAAATGGTTGTTACATCAGTTGGAAACAAACTGAATGTGGCTGAGATGAAAGGCTCTATGAATTGTAATTTTGAAAAGAAAGGCCTTTTGCACAGTCTAATTGAGAAGCCAATTTCTAACCTTGACAAAGCCTCTCTTTTTATCTTTACACTGGTTGCACTTGTAGAGTTCATTCGCCTAATCTGTAAAAAAGATGGAGATGGTGGCGGGTTGCCGGATATTAAAGGGAATAGTGTTTCAGTTGGCCTATTGGTGCAACTCCTTGAGAACATTTTTTTGAGACCACGAGGAAAGATTTCCATTTTAGCAAGACTTTTTAGTGTTGTAATATTGTGTGTACAACATGGAGTGCCACTTATGGTTACTTTAACTCTCCATTACCAGAATGATAAAGTAGTGCTTAACCAAGAAGTTGTTCTTAATGATTTGTCAGCTTGTACAACAATGGGGTTGGTAACTGTCATCTGCAACGATGTATCTGGCGGGATTATATCAAGACCAATGGAGGTTAACGGAATCTGGATGGGGGAGGGGGAGGCAGATATGAGCAAGGTTGAGGAATCAGAAGCAGGTTTAGTTGTACTTGACAAGCTTAAACAAGGACTTGGTTTATCAGTCCTTGCACCAGGATTATCTCCTTCTCCTGTGTCCAATTCACTTGTTTCTTGGGCAGAAAAAACATGGGAAATGGACATTTTATCTTTCAGAGACAATTTTCACATTCTTAAGCATAGCAAACTGGATTCTAACCAAGAGGGCAATGGAGTTTTGGCGAGAAAAGTTAGGGTCAATGAACAAGTTATGCACTTGCATTGGAGCGGGGATGCACCCACAATATTGGAAATGTGTTCACAATACTATGATAGCGAAGGAGCATGTCATTCCATAGAAAATCAGAAAATCAAATTTGCGCAGGAGATTCAAGAGATGGAGGATAATGGCCTTAAGCCAATTGCATTTGCTTGTAGAGAAACACAAGTGCAAGAACTGGAGCAAGATGAATTGACCTTGTTAGCACTGATAGGTCTCAAATTCAAGAGTCAAGAATCAACAAAATTAGCTTTGCAAAATCTCAAGAAAAATGGAATAGAAATCAAATTGGTCTCGGAGGATGACATCATGGTAGTGAAAGACATAGCTTGTGAACTGAGAATAAAAGTGCCGATAAACGGTCACCTTGAAGGAAAAGAACTTCAAGATTTGAATGACAAAGAAAGATTAGTTAAAGTGGACAAAGCCATTGCAATGGGAAGTTTCAGTCCTAAAGACAAGCATCTCATGGTAAGGTGTTTGCAAGACAAAGGTGATGTCGTTGCGTTCATTGACCAACAAAGGTTGATGACGAATCATACTTCAGAAGTTCTAAAGCTAGCTGATGTAGGGATAGTTCATATCTCTCTAGGCAGAAGAATTGATAGTAGAGAGAAATGTGGTATGTCTATCACATGTTTCAGTGCATTGGAACCAATTGTTATGGCTGGCAGAAGTAAATATCACAATATTCAAAAGTTCATTCAAGTTCAGCTGACAGTTGGTATATCAGGGTTACTCATAACCTTGATTACAACAATATTCACAGGAAATTCTCCCCTAACAGCAATCCAATTAATTTGGGTGAACACGCTAATGTGTATTTTGGGTGGTCTAATGATGGTGATGGAATTAAGTAGAGAGGAAGAACTTGTCAAAAAACCATCTGATAGGAATCAACCAATTATAACCAAGAAAATATGGAAAAACGTAGTTTTTCAAGTTCTGTATCAGGCTTCTGCATGCATGATACTTGAATTTGGGGGACATGTAACTGCCAGTGAAAAGCAAGTAAGGAAAATCATGATCTTCAATACATTCTTTCTATGCCAGCTCTTCAATCTGCTCAATATCATGGATTTCTTGAAAGCAGACGTTTTCAAGATTGATGTTCGGAAGTACTGTTTCTTAGTGGCTTTAGGTGTTTGTGTTGTTATGCAGATTGTGGTAATTGAGTTTGCAAAAAGCCTAGCAGATTGCATGCGGCTGAATGCTGCTGGATGGGCTATCTGTGTCCTGGTCAGTGCTGTTTCATGGGTACTTGAGTGGACCTTGAAGAAGATTTTTTCAGTTTTTTTCAGCACCAATTATAGTTCACCCTTGGACTCTCAAGTGTCTACCCCACAACCTTTGTTCTATCTTTATTGGGGGCTTCCATTTATGATGCTTCTTTTGTTCCCTATAGGACTAGCAGGTATGACATTGTATTGA 3159 0.3998 MSSESESANIELGASLLITTTSSSSSKYSKKWRKSLYIGFLISLKKPTTSSDPYEESTSPFSSAPYTSLPPARSSSAKSFVSIDIVSHVQEEDGEEEGDGVVEQPVRDDIARIVKEKDLKSLLELGGVGRVCNVLQAQSQHSNEQIIGNFGTSFSSILWNSCKHNRYTISLMLISASLSFAMELKQEGPRYGWHDGVAMVFVVLLMIAFSSITNFRRERKMVKLAKRKAQEAKFNVKRGEHDRVLPVYDIVVGDMLCLSPHDEVPADGLLVSGDVLVLTCGMKNEKIDCVENPFLIAGSKVIEGHGQMVVTSVGNKLNVAEMKGSMNCNFEKKGLLHSLIEKPISNLDKASLFIFTLVALVEFIRLICKKDGDGGGLPDIKGNSVSVGLLVQLLENIFLRPRGKISILARLFSVVILCVQHGVPLMVTLTLHYQNDKVVLNQEVVLNDLSACTTMGLVTVICNDVSGGIISRPMEVNGIWMGEGEADMSKVEESEAGLVVLDKLKQGLGLSVLAPGLSPSPVSNSLVSWAEKTWEMDILSFRDNFHILKHSKLDSNQEGNGVLARKVRVNEQVMHLHWSGDAPTILEMCSQYYDSEGACHSIENQKIKFAQEIQEMEDNGLKPIAFACRETQVQELEQDELTLLALIGLKFKSQESTKLALQNLKKNGIEIKLVSEDDIMVVKDIACELRIKVPINGHLEGKELQDLNDKERLVKVDKAIAMGSFSPKDKHLMVRCLQDKGDVVAFIDQQRLMTNHTSEVLKLADVGIVHISLGRRIDSREKCGMSITCFSALEPIVMAGRSKYHNIQKFIQVQLTVGISGLLITLITTIFTGNSPLTAIQLIWVNTLMCILGGLMMVMELSREEELVKKPSDRNQPIITKKIWKNVVFQVLYQASACMILEFGGHVTASEKQVRKIMIFNTFFLCQLFNLLNIMDFLKADVFKIDVRKYCFLVALGVCVVMQIVVIEFAKSLADCMRLNAAGWAICVLVSAVSWVLEWTLKKIFSVFFSTNYSSPLDSQVSTPQPLFYLYWGLPFMMLLLFPIGLAGMTLY 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g05157 1052 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 525 649 IPR023299 GO:0000166
Trre10g05157 1052 Gene3D - 505 645 IPR023299 GO:0000166
Trre10g05157 1052 Gene3D - 459 471 IPR023214 -
Trre10g05157 1052 Gene3D - 472 493 IPR023299 GO:0000166
Trre10g05157 1052 Gene3D - 646 783 IPR023214 -
Trre10g05157 1052 Gene3D - 787 1008 - -
Trre10g05157 1052 SUPERFAMILY Calcium ATPase, transduction domain A 233 316 IPR008250 -
Trre10g05157 1052 Pfam E1-E2 ATPase 230 364 - -
Trre10g05157 1052 MobiDBLite consensus disorder prediction 46 69 - -
Trre10g05157 1052 Pfam Cation transporting ATPase, C-terminus 835 1003 IPR006068 -
Trre10g05157 1052 Gene3D - 218 327 - -
Trre10g05157 1052 SUPERFAMILY Calcium ATPase, transmembrane domain M 153 1009 IPR023298 -
Trre10g05157 1052 Gene3D - 167 458 - -
Trre10g05157 1052 PANTHER CATION TRANSPORTING ATPASE 107 1006 - -
Trre10g05157 1052 SUPERFAMILY HAD-like 641 770 IPR036412 -
Trre10g05157 1052 Coils Coil 599 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g05157 Trre-Chr10 58568124 58571438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g05157 71 1028 Primary Pumps ATPases AT3G63380 31.877 3.79e-135 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g05157 K01537 - gmx:102661547 1041.57