Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g05140 ATGTCTTCTTCTTCTTCATCTTCCTCTTCTTCTTCTTCTTCTCCATCATCTTCATCACATCAACAACCATCTTCATCAATAATAACTCCTTCAAATGTTGTTGATATACCTGGTCCAAGTAACAATAACAATAACAATGATGATGAATTTGAAGCCCCTTCTTCTTCATCATCTTCAAGACAACGTGCTATGAATGAAGTATGGCTTGAACCTGTTGTTGAAGCATTGGCTACTCAAGTTGCCATTGATGCTTCTCATTATCATGGTCGTCTTTCTGCTGCTTCTGCTCTTGCCATTATTTTTCAGGTTTGTTCTACATGGAGAGAAGTGTCGCGCTCGGATCTACTGTGGCAAAGGCTCACGAGACGTATCTGGCGCAGAACATATAGATTGAGAGACACGTGGCAACTTGAGTACATCTACTGGCATCGAACGGCCAGGAATTTCACAACAGGTAGACATGCTTTAGTGGTCCCACAATATGATCCAGGAGACCACCACCAAACCCTCATTTGCCGCTGCCTTACTCTCTCCGACACCCACCTTGCCTGCGGCTTTGTCGATGGCACTGTTCGACTATTCGATCTCAACACCGGCACACACGTCACTACTTTTTGGTCCAATCACGGTCACCTATTCGGCCCATTCTCACAATCTATTTCAGGAATCGTAATTGCAAATTCTAGTCTCGCGTTTGCAAGACTAGATGGTGATATTTACATGTCATTGATTAATGGGCCCGGACACATACCCGGGCCCATTCCAGCACGAAGAGCAATTATCGGCGATGTAGTTAATAACGGAGTATTAGTAGAATTCGCGGGTTGTAGCCGATTTTGGGTTGGTTTATTTGCGGGCCACGCAGGCGGGGCTTTTCAAATATGGGACACGCAAACGGAGCAACGCGTATTCGTCGGCGGTTCATTAACCGATCCCGAAGCCGTTCAAGGATGGCATATGTTAACAGAATTAGTTGAACCGGTCGGTCGAGTCCGAGTAACAGAAAGAGAATTTGTTGTAGCATGCACAACTTCAAGATTGATTTGTTTCAACTTAAGAAATCCAGAGATTCTATTACGTGACATGGGATCCACAACCGGTTTCATGGTTAGTTCATTAGACATTAGCCATGAAGTTTTTGTTGTAGTTGAAAGAAATGGTGTTGGAACGGTTAGGCGCGTGGGGAATTTTGAGCGCGTGAGTAGGTTTCGTTTAAGAGGTTCATGGTTAAGGGGTTTATTAGGGTGCATGAATTTAGGGTATGTTATAACATATTCAAGTGTGTCTGGTTTGTTGAGAGTGTGGGACATACATGAACCTACGGCAAGGTTGTGTATTACAATTGCGGTTAGAGAGGATGGTGGAGAGGGACAAGGACAAGTTCATGGTAATAGTATGGTTGCTAATCAAACTCATGTTGCTATTTCATCTAATGACTCTTCCATACATTTATTGGATTTTAGTGTACAGTAG 1473 0.4352 MSSSSSSSSSSSSSPSSSSHQQPSSSIITPSNVVDIPGPSNNNNNNDDEFEAPSSSSSSRQRAMNEVWLEPVVEALATQVAIDASHYHGRLSAASALAIIFQVCSTWREVSRSDLLWQRLTRRIWRRTYRLRDTWQLEYIYWHRTARNFTTGRHALVVPQYDPGDHHQTLICRCLTLSDTHLACGFVDGTVRLFDLNTGTHVTTFWSNHGHLFGPFSQSISGIVIANSSLAFARLDGDIYMSLINGPGHIPGPIPARRAIIGDVVNNGVLVEFAGCSRFWVGLFAGHAGGAFQIWDTQTEQRVFVGGSLTDPEAVQGWHMLTELVEPVGRVRVTEREFVVACTTSRLICFNLRNPEILLRDMGSTTGFMVSSLDISHEVFVVVERNGVGTVRRVGNFERVSRFRLRGSWLRGLLGCMNLGYVITYSSVSGLLRVWDIHEPTARLCITIAVREDGGEGQGQVHGNSMVANQTHVAISSNDSSIHLLDFSVQ 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g05140 490 MobiDBLite consensus disorder prediction 1 61 - -
Trre10g05140 490 SUPERFAMILY WD40 repeat-like 166 486 IPR036322 GO:0005515
Trre10g05140 490 PANTHER WD40 REPEAT PROTEIN 12, 37 27 445 - -
Trre10g05140 490 SUPERFAMILY F-box domain 90 144 IPR036047 GO:0005515
Trre10g05140 490 Gene3D - 127 262 IPR015943 GO:0005515
Trre10g05140 490 Gene3D - 266 490 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g05140 Trre-Chr10 58463764 58470105 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SAP Trre10g05140 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g05140 - - gmx:100807240 604.749