Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g05118 ATGAATGATTATGCATACAAAGTTGAAAGCATGAATCGTTTAGTTCAATGGAGAGTTCATAATTTATCAACATGCACTTATATCAAAGCTGATCCATTCAAAATAGCTATGTGGAATTGGCATTTATCAGTGGAAAAGAATTGTGGTTTACGTATTGAATTATATCCAGAAATGTCCAAAGAAAATTCTTCTCCAATTGCATCTTTCATTATTAGGATTCTTAGTTATGGTGGAAATAGCAAAATCTTGACTCAATCAGAAATAAAAGATAAACTTCTTAGCAATAAGGATTGTTTTGTTTGGGAGATTGAGGTTCCATTACCTGGAAAATTCATAATTGACATTGAGTTTCTTGATTTGAAAACTACATGTACAAATGGTGGGGAAGCTTGTTCTATTTGGTCTAATGGATTTATACAGAAAACACAAAATGCAACAGCCCTTGAATCGCTTGGTCGAATGATAAGAGAAGGTATCTATACCGACATAACAATCAATGTTAATTCCGAGGGAAGCATAAGAGCTCATCGAGCTATTCTTGCTTCACAATCACCTGTTTTTCGCAGCATGTTTTCGCATAATGTTAAGGAGACCGATTTGTCTACCATAAACATCGAAGATATGTCAATTCAAGCTTGTCAAACATTTATAAATTTTCTTTACGGAACCGTCGATGATGACGAATTTCTTATACATAGACTAGAGCTATTGCACGCCGCGGATAAGTATGATATCCACGACTTGAGAGAAGCATGTCAAAAGAGTCTTCAAGAAGATATTAACGCGAAAAATGTACTCGAGAGACTCCAAATTGCATCTTTGTTTCGATTAACAAAGCTGAAGATTAGTTGTATGCAATATCTTGTGAAATTTGGTAAAATATATGATGTTCAAGGTGATTTAACTGCATTCTTGCAAACTGCAGATAGAGATTTGATATGTGAAGTCTTTCATGAAATTCTTGATGCATGGAAAAAGTAA 981 0.3405 MNDYAYKVESMNRLVQWRVHNLSTCTYIKADPFKIAMWNWHLSVEKNCGLRIELYPEMSKENSSPIASFIIRILSYGGNSKILTQSEIKDKLLSNKDCFVWEIEVPLPGKFIIDIEFLDLKTTCTNGGEACSIWSNGFIQKTQNATALESLGRMIREGIYTDITINVNSEGSIRAHRAILASQSPVFRSMFSHNVKETDLSTINIEDMSIQACQTFINFLYGTVDDDEFLIHRLELLHAADKYDIHDLREACQKSLQEDINAKNVLERLQIASLFRLTKLKISCMQYLVKFGKIYDVQGDLTAFLQTADRDLICEVFHEILDAWKK 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g05118 326 Gene3D Potassium Channel Kv1.1; Chain A 136 290 IPR011333 -
Trre10g05118 326 Pfam BTB/POZ domain 156 258 IPR000210 GO:0005515
Trre10g05118 326 SUPERFAMILY POZ domain 145 258 IPR011333 -
Trre10g05118 326 ProSiteProfiles BTB domain profile. 161 221 IPR000210 GO:0005515
Trre10g05118 326 PANTHER OS08G0495500 PROTEIN-RELATED 5 325 IPR044714 -
Trre10g05118 326 CDD BTB_POZ_ZBTB_KLHL-like 160 243 - -
Trre10g05118 326 SMART BTB_4 161 260 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g05118 Trre-Chr10 58303591 58304916 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trre10g05118 BTB 1.6e-22 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g05118 K10523 - gmx:100790186 442.195