Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g05112 ATGCCTCAGGATAGTAGCTTATTAAGCTCAATTTTCGCATCTCCTGCTTCGAAGAGGATATTGAATTTGAAGGGTTCAGTCTTTAACAATAGTGAGGTGAATGAGGAGATCAATGATCATGAATTAGCATACAGGAAAGCAGAGGAAGCAGCATCAAGGAGGAATGAAGCAGCGGAATGGCTTCGAGAAATGGACGAAGTGGCTTCTTCATCACTCTCCAAACAACCTTCCGAGGAACAATTCTGTCTCGCTCTCCGCAATGGTCTCATTCTCTGCAACGTACTCAACAAAATCAATCCCGGTGCTATCCTCAAGGTGGTGGACAATCAAGTCCTTGCAGTTCACTCTCCAGAAGGACCAGCCCACTCTTGCATTCAGTATTTCGAAAACATGAAGAACTTTCTTGATGCTGTTAAGGATATGGCCCTTTTGACCTTTGAAGCTTCTGATTTGGAAAAGGGTGGTTCATCAAGCAAAGTTGTAGACTGCATTCTTTGTTTGAAAGGATATTATGAATGGAAGCTATCAGGCGGAGTTGGGGTTTGGAGGTATGGAGGAACTGTGAGGATTACTTCTTTCCCCAAGGGAACTCCTTCTTCATCTATTTTGGGCGGTGAAAGTGCTGAGGAGTCCCTTGATGAATCTCAGTCCTCACAGTATAAGCAGTTGATTGAATTTCTTCGTATGTCTCAAGAGGTCTCAATCGAAGAAACCAGAACTGCTAGTGCTCTGGCTTTCCTGTTTGATCACTTTGGACTCAAACTTCTCCAGGCTTTCCTTAGAGAGATTGATGATGGGGTTGAAGATCTACCGCTCAATGCAATGGTAATTGATACATTTCTTAGCAAGATAGTAAGGGATTTCTCCACTTTACTTGTTTCTCAAGGCACCCAGCTTGCATTTTTCCTCAAGAAAATATTGAAAGGCGATAATGGTTGTCTCTCTAAGAAAGAATTCATGGAAGCTATCGCATTATATCTTAATCAAAGAAGTAGTTTGTCGTCAAATGATTTATCTAAATTCTGCATTTGTTGGGGAAAACGTGATAGCAGTGCTCAAAATAATGTCATATTTTCATCCAAGTATGCTGAAATAATTGATGCGCAGCAGAAACAACTTGAGGGAATGAAATACTTACTAGAGGAGATAAAAAAGGATGTCAAACAGATTCAATCTGAATGGGACCAAGAATCGAGCAGGCTCGAGAATCATATAAAGAGCCTCGAGGTGACCTCCTCTTCCTACCACAAAGTTTTAGAGGAGAACCGGTCTCTTTACAATCAAGTGATAGACCTCAAAGGATCCATTAGGGTCTATTGTAGAGTGAGACCCTTCTTAGGACAATCAATTGGACAATCTACAGTTGATTATATTGGAGAAAATGGAAACATAATGATTGTGAATCCCCTTAAGCAGGGAAAAGATGCTAGAAAAGTATTTTCATTCAATAAAGTGTTCGCAACTAATGCCACACAAGCACAAATATATTCCGATACAAAACCATTGGTTAGATCTGTTTTAGATGGCTATAATGCATGCATCTTTGCATATGGACAGACTGGCTCAGGGAAGACCTACACGATGAGTGGTCCGGATCTGATGACTGAAGAGACATGGGGTGTTAACTATAGGGCTTTGCTTAGTTGTACTCAAGATGTTCTTGATTTAATGAAAATTGGTCAGAGGAACCGTGCGGTGGGTGCTACCGCTCTAAATGAGCGAAGCAGCCGTTCTCATAGCGTGTTGACGATTCATGTCAGAGGAAGGGACTTAGTTTCTAATTCAGTTCTTAAGGGTTGTCTCCATCTTGTGGATTTGGCTGGGAGTGAGAGAGTTGAGAAATCCGAGGCTGTTGGCGAGAGACTAAAAGAGGCACAACATATTAATAAATCTCTTTCTGCACTTGGCGATGTTATCTCTGCTTTGGCGCAGAAAAGTCAACATATTCCTTACAGAAATAGCAAGCTTACACAAGTTTTACAAGATTCATTAGGTGGCCATGCAAAGACTTTGATGTTTGTTCATATAAATCCCGAAATCAATGCCATTGGGGAGACAATTAGCACATTGAAGTTTGCTGAGAGGGTTGCATCCATTGAACTTGGAGCTGCTAAATCTAACAAAGAAACCGGTGAAATCCGAGAGCTCAAGGAAGAGATATCAAATATCAAATTGGCATTGGAGAGAAGGGAAACTGAACTGGAGCAATGGAAATCTGGAAATGCGCGGAATGTCGTGGAATCTCAGAAACCAAGAGCCATTTCACCTTTCCGTTTGCCCAAATATGGTACCAGTGGCAGCACGAAGCCTGAAAATAGTCAAAGATCCATTGATGATAGAAGCTCTGAGGCAAAAAATTATTCTTCTGGTAAGCAACGAAGGTCGAGATTTCCCTCAACATTTATTGACAAGGACTCCATACCAAAAATGTCTCTTGTGTCTGAAGAAAAGTCAGTGAGCTCAGGAAAGCATAGATCACCGTCACCTACAATCAGGAGATCAATATCCACCGATAGAGGTTCTGTCACTAAAAGCAAGATCAAAATTGACAATGCAGAAAACCAACCAATTTTGAAGCATCCATTTCCAGCTAGAGTACCAGTAAATAAATCTCTCGCGACAATGACACCATCTATAGACAGTAACTCAAGGGTCTATGTACATTCACAAGAGCCGGTGAAGCACGATAACATTTCCGAACCTCTCATTAACTTCGAGAAAGTAAGCTTTAGGAAAGTTCATCAAGAAAACAAAGAGGAACCATCCAAACAACCATTTCGGGTAGTAAGACACGGAAGTGTTAGGAAAAACAAAGCTGACAATAACGTCAAGGCCAAACATCGTCAACCATCTCCCTTTAGGTTTCAAAAGACCGATTTAGTACCTAATTCTATACCTGGCATGGAAATTGCTGGTGAAATTGTGGAGGGGCCTCGAAAGATTGATTTCTCTGAGACTGAAAATGATTTTAACTTTATGGAATCTGCAATCAACGGTGTATTAAATGTTCCAAAAAAACGTCGCAGCATCTCAAGGAATTCTCAGAACCTTGAACCAAGAGGAATTGTGCAAGGAGCTGAACCATTGTTGTCTAGTAAAGTTGAAAACAAAATTTCAAACGGTCAAGTTCGAAATCTTAAGGAAGTCAATACATCCATGCATGAATTTAAAAGAAGCCGATCGACACCACGAGGAAAGTTTTTTGTTTTATGA 3213 0.4083 MPQDSSLLSSIFASPASKRILNLKGSVFNNSEVNEEINDHELAYRKAEEAASRRNEAAEWLREMDEVASSSLSKQPSEEQFCLALRNGLILCNVLNKINPGAILKVVDNQVLAVHSPEGPAHSCIQYFENMKNFLDAVKDMALLTFEASDLEKGGSSSKVVDCILCLKGYYEWKLSGGVGVWRYGGTVRITSFPKGTPSSSILGGESAEESLDESQSSQYKQLIEFLRMSQEVSIEETRTASALAFLFDHFGLKLLQAFLREIDDGVEDLPLNAMVIDTFLSKIVRDFSTLLVSQGTQLAFFLKKILKGDNGCLSKKEFMEAIALYLNQRSSLSSNDLSKFCICWGKRDSSAQNNVIFSSKYAEIIDAQQKQLEGMKYLLEEIKKDVKQIQSEWDQESSRLENHIKSLEVTSSSYHKVLEENRSLYNQVIDLKGSIRVYCRVRPFLGQSIGQSTVDYIGENGNIMIVNPLKQGKDARKVFSFNKVFATNATQAQIYSDTKPLVRSVLDGYNACIFAYGQTGSGKTYTMSGPDLMTEETWGVNYRALLSCTQDVLDLMKIGQRNRAVGATALNERSSRSHSVLTIHVRGRDLVSNSVLKGCLHLVDLAGSERVEKSEAVGERLKEAQHINKSLSALGDVISALAQKSQHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEINAIGETISTLKFAERVASIELGAAKSNKETGEIRELKEEISNIKLALERRETELEQWKSGNARNVVESQKPRAISPFRLPKYGTSGSTKPENSQRSIDDRSSEAKNYSSGKQRRSRFPSTFIDKDSIPKMSLVSEEKSVSSGKHRSPSPTIRRSISTDRGSVTKSKIKIDNAENQPILKHPFPARVPVNKSLATMTPSIDSNSRVYVHSQEPVKHDNISEPLINFEKVSFRKVHQENKEEPSKQPFRVVRHGSVRKNKADNNVKAKHRQPSPFRFQKTDLVPNSIPGMEIAGEIVEGPRKIDFSETENDFNFMESAINGVLNVPKKRRSISRNSQNLEPRGIVQGAEPLLSSKVENKISNGQVRNLKEVNTSMHEFKRSRSTPRGKFFVL 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g05112 1070 Coils Coil 366 393 - -
Trre10g05112 1070 PRINTS Kinesin heavy chain signature 509 530 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre10g05112 1070 PRINTS Kinesin heavy chain signature 649 670 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre10g05112 1070 PRINTS Kinesin heavy chain signature 600 618 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre10g05112 1070 MobiDBLite consensus disorder prediction 813 844 - -
Trre10g05112 1070 CDD CH_AtKIN14-like 53 168 - -
Trre10g05112 1070 MobiDBLite consensus disorder prediction 746 844 - -
Trre10g05112 1070 Pfam Microtubule binding 421 548 IPR031852 GO:0008017
Trre10g05112 1070 SMART ch_5 53 170 IPR001715 GO:0005515
Trre10g05112 1070 SUPERFAMILY Calponin-homology domain, CH-domain 45 195 IPR036872 -
Trre10g05112 1070 SMART kinesin_4 433 707 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre10g05112 1070 ProSiteProfiles Kinesin motor domain profile. 548 699 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre10g05112 1070 Gene3D Kinesin motor domain 548 740 IPR036961 -
Trre10g05112 1070 Gene3D Kinesin motor domain 377 547 IPR036961 -
Trre10g05112 1070 Pfam Calponin homology (CH) domain 52 172 IPR001715 GO:0005515
Trre10g05112 1070 Gene3D - 43 172 IPR036872 -
Trre10g05112 1070 ProSiteProfiles Kinesin motor domain profile. 435 546 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre10g05112 1070 FunFam Kinesin-related protein3 542 741 - -
Trre10g05112 1070 PANTHER KINESIN-LIKE PROTEIN KLP-3 548 870 IPR027640 GO:0003777|GO:0007018
Trre10g05112 1070 Pfam Kinesin motor domain 550 699 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre10g05112 1070 FunFam kinesin-like protein KIN-14F 43 172 - -
Trre10g05112 1070 Coils Coil 706 733 - -
Trre10g05112 1070 Coils Coil 30 50 - -
Trre10g05112 1070 ProSiteProfiles Calponin homology (CH) domain profile. 51 172 IPR001715 GO:0005515
Trre10g05112 1070 MobiDBLite consensus disorder prediction 773 790 - -
Trre10g05112 1070 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 435 736 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g05112 Trre-Chr10 58256550 58263060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g05112 371 716 Calmodulin-binding Proteins AT5G65930 37.346 6.59e-61 226