Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g05107 ATGTCTACAAACTTAAAGAATCTTTCACTTTTTGGCAAAATCATTTCCCTCACCTTGCTTCTTTTCTCAATAAACTTTCTTTTCTTTCAATGTTGTAACTCTCTTGATGAACAAGGCCAAACTCTTTTAGCATGGAAGGAGAGTTTTAACGTTACTTCGGATGTATTAGCATCTTGGAATCTTTCAAACCAAACACCATGCAATTGGTTTGGTGTGAAGTGCAATTTACAAGGAGAGGTTGAGGAGATAAATTTGAAGTCATTGAACTTACAAGGTTCATCATTGCCTTCAAATTTTCAACTTCTCAAGTCCTTGAAGGTTCTTGTCCTCTCAGCAACCAACATAACAGGAAGGATTCCAAAACAAATTGGAGACTATCAAGAGCTTGTTTTCATTGATCTCAGTGAAAATTCTCTCTTTGGTGAAATCCCAGAAGAAATTTGCAGGCTAAGCAAACTTCAAAATTTAGCTCTTCATACAAACTCTCTTGAAGGAAATATTCCATTCAACATAGGAAATTTATCAAGTCTTGTGAACTTGACACTCCATGACAATAAATTCAGTGGCGAAATTCCAAAGAGTATTGGTTCCTTAAGTAAGCTTCAAGTATTCAGAGCAGGAGGGAATTCAAACCTCAAGGGTGAGCTGCCATCGGAGATCGGAAACTGCACCAACTTGGTCATGTTAGGCCTCGCAGAAACCGGCATTTCCGGTAGTATTCCTTCTTCAATAGGGATGCTGAAGAAAATACAGACCATAGCCATTTACACAACTCAGTTGTCAGGCTCTATTCCCGAATACATAGGAAATTGCAGTGAGTTGCAGAATCTTTATTTGTATCAGAACTCGATTTCTGGTCCAATTCCGCGTCAAATTGGAGAGCTGAACAAACTTCAGAGTCTACTTTTATGGCAAAACAATATGGTAGGGACAATACCAGAAGAGCTTGGAAACTGCAGAGATCTCAGTGAGATAGATTTGTCAGAAAATCTTCTCACAGGTAGCATACCAATCAGTTTCGGGAAGCTATCAAATCTAAAAGGACTTCAGCTGAGTGTTAATCAATTGTCAGGTATTATACCACCTGAAATTTCAAACTGCAGTTCTTTGACTCAGCTTGAAGTTGACAACAATGCTATTTCTGGTGAGATTCCTTCTGTTATTGGCAACTTGAGAAGCTTGACACTCTTCTATGCATGGAAGAACAAGCTAACAGGAAAAATCCCAAATAGTCTTTCAGAGTGCAAAGATCTTCAGTCACTTGATCTTTCATACAATAACTTAACTGGTTCAATACCAAAACAACTATTTTTGTTGAAAAATCTCACTCAACTTATGCTTCTTTCCAATGATTTGGAAGGATTCATACCAGCTGATATCAGTAACTGCACAAGTCTCTATAGGTTGAGGTTAAGTCAGAATAGACTAGTTGGTAACATTCCATCTGAGATTGCCAACTTGAAAAAATTGAATTTTTTGGACTTGAACACCAATCATCTTGTGGGGGAGATTCCTCCAACATTATCAAGATGCCAAAATCTTGAGTTTATTGATCTCTCACACAACAAGCTCTCGGGGAATCTAGATGCTCTTTCTAGCCTTCAGAATCTTGTTTCCTTAAATGTTTCCTTCAATGAATTCTCTGGTGAATTGCCTAACACAACATTGTTTAGGAAACTCCCTCTCAGTGATCTCACTGGAAATAAAGGTCTTCATATTTCGGAAGATGTTGTAACTCCAGCAATCAGAACAAGAGCCAAAAGTCATGTTAGATTAGATATGGAGATTATATTGTTAATTCTCTTGAGCACCATTCTAGTACTAATACTTTTCAAATTCTATGTCATGGTACGTGATTTTATTGCTGTGGAAGCATTCTGGAGAAATTTCGAAGCACCCAATAAGCTTTTGTATCGGATGTTTGATTTCTCTATTGATAACATTGTCAAGAATTTCAAAGCTTCCAATATGATTGACATTACAAGCTCTGGAGTTTTGTACAAGATAACAACTCCAAATGGCCATATACTAGCAGTTAAAAAGATGTGGCCAGATTCTGAAGCCTTAAGTTCAGAAATTCAAATATTAAGTTCAATAAAACATAAGAATATCATCAAGCTTCTTGGTTGGGGACCCTATAGGAATAGGATGCTGCAGTGTTATGAGTACTTCCCTAGTCTGAGCTCATTGCTTCATGGTTCAGAAAAGGGAAAGTTAGATTGGGATACCAGGTTTGAAGTCATCCTAGGCCTAGCTCAAGCACTTGCATATTTGCACCATGATTGTGTGCCTTCTATATTGCATGGAGATGTCAAAGCAACAAGTCTTTTATTAGGTCCTGGCTATCATCCTTACCTTGCTAACTTTGACCTGGCAAGAATAGGAAGTGAAAAAGGTGACGATGCTAAATCCAAGTCAGTTCAAAGACCTCACTACACTGCGAGTTCCCATGGATACACAGATCCTGAGCTTGACTCAATGCAGAAGATCGATGAGAAAACCGACGTGTACAGTTTCGGTGTGATCGTACTTGAGGTGCTGACAGGAAGGCAGCCATTAGATCCAACTCTGCCAGGAGGTATACATTTGGTTCAATGGGTTAAGAATCACTTATCTAGCAAAGGAAACCCATTAGAAATTCTTGACTCAAAGCTGAGAGAGAGGACTGAACTTACTGCTATGCATGAAATACTACAAACTCTAGCTGTGTCAATTTTATGTGTCAGTACAAAAGCTTATGAACGTCCAACGATGAAAGACGCCATTGCAATGTTCAACCAATTTCGATATTTTGTTTAG 2799 0.383 MSTNLKNLSLFGKIISLTLLLFSINFLFFQCCNSLDEQGQTLLAWKESFNVTSDVLASWNLSNQTPCNWFGVKCNLQGEVEEINLKSLNLQGSSLPSNFQLLKSLKVLVLSATNITGRIPKQIGDYQELVFIDLSENSLFGEIPEEICRLSKLQNLALHTNSLEGNIPFNIGNLSSLVNLTLHDNKFSGEIPKSIGSLSKLQVFRAGGNSNLKGELPSEIGNCTNLVMLGLAETGISGSIPSSIGMLKKIQTIAIYTTQLSGSIPEYIGNCSELQNLYLYQNSISGPIPRQIGELNKLQSLLLWQNNMVGTIPEELGNCRDLSEIDLSENLLTGSIPISFGKLSNLKGLQLSVNQLSGIIPPEISNCSSLTQLEVDNNAISGEIPSVIGNLRSLTLFYAWKNKLTGKIPNSLSECKDLQSLDLSYNNLTGSIPKQLFLLKNLTQLMLLSNDLEGFIPADISNCTSLYRLRLSQNRLVGNIPSEIANLKKLNFLDLNTNHLVGEIPPTLSRCQNLEFIDLSHNKLSGNLDALSSLQNLVSLNVSFNEFSGELPNTTLFRKLPLSDLTGNKGLHISEDVVTPAIRTRAKSHVRLDMEIILLILLSTILVLILFKFYVMVRDFIAVEAFWRNFEAPNKLLYRMFDFSIDNIVKNFKASNMIDITSSGVLYKITTPNGHILAVKKMWPDSEALSSEIQILSSIKHKNIIKLLGWGPYRNRMLQCYEYFPSLSSLLHGSEKGKLDWDTRFEVILGLAQALAYLHHDCVPSILHGDVKATSLLLGPGYHPYLANFDLARIGSEKGDDAKSKSVQRPHYTASSHGYTDPELDSMQKIDEKTDVYSFGVIVLEVLTGRQPLDPTLPGGIHLVQWVKNHLSSKGNPLEILDSKLRERTELTAMHEILQTLAVSILCVSTKAYERPTMKDAIAMFNQFRYFV 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g05107 932 Gene3D Phosphorylase Kinase; domain 1 628 723 - -
Trre10g05107 932 Pfam Leucine rich repeat N-terminal domain 36 75 IPR013210 -
Trre10g05107 932 Pfam Protein kinase domain 663 921 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g05107 932 PRINTS Leucine-rich repeat signature 511 524 - -
Trre10g05107 932 PRINTS Leucine-rich repeat signature 418 431 - -
Trre10g05107 932 Pfam Leucine rich repeat 322 380 IPR001611 GO:0005515
Trre10g05107 932 Gene3D Ribonuclease Inhibitor 35 191 IPR032675 -
Trre10g05107 932 Gene3D Ribonuclease Inhibitor 294 576 IPR032675 -
Trre10g05107 932 ProSiteProfiles Leucine-rich repeat profile. 417 439 IPR001611 GO:0005515
Trre10g05107 932 SMART LRR_typ_2 415 439 IPR003591 -
Trre10g05107 932 SMART LRR_typ_2 534 559 IPR003591 -
Trre10g05107 932 SMART LRR_typ_2 343 367 IPR003591 -
Trre10g05107 932 SMART LRR_typ_2 295 319 IPR003591 -
Trre10g05107 932 SMART LRR_typ_2 487 511 IPR003591 -
Trre10g05107 932 SMART LRR_typ_2 174 198 IPR003591 -
Trre10g05107 932 Gene3D Transferase(Phosphotransferase) domain 1 725 930 - -
Trre10g05107 932 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 209 926 - -
Trre10g05107 932 FunFam Putative LRR receptor-like serine/threonine-protein kinase 492 577 - -
Trre10g05107 932 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 210 433 - -
Trre10g05107 932 Gene3D Ribonuclease Inhibitor 192 292 IPR032675 -
Trre10g05107 932 SUPERFAMILY L domain-like 321 571 - -
Trre10g05107 932 MobiDBLite consensus disorder prediction 800 820 - -
Trre10g05107 932 FunFam Leucine-rich receptor-like protein kinase family protein 35 197 - -
Trre10g05107 932 ProSiteProfiles Protein kinase domain profile. 652 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g05107 932 SUPERFAMILY RNI-like 82 332 - -
Trre10g05107 932 SUPERFAMILY Protein kinase-like (PK-like) 640 928 IPR011009 -
Trre10g05107 932 ProSiteProfiles Leucine-rich repeat profile. 513 535 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g05107 Trre-Chr10 58242305 58245256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g05107 95 931 Receptor kinase-like Gene Family AT5G56040 47.756 0.0 734
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre10g05107 Pkinase 1.4e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g05107 - - cam:101492613 1375.92