Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g05102 ATGTGTGAATGTTTGGTCCCTCAATCATCTCTATTACTTGCAACATCAGAACATGCTTGTTTCAAACGAACACTTATGTCATATAAGGGTGCTTGCACTGTGATCAATGGAGGAATCCGTTGTGATAATACTGATTCTGGTATCAAAGAATGGAGAAAAAGAGGATTTTCTTGTGACAAACTTGTAATTGGTTTACCTTATCATGGATTTGCATGGACACTTGTGAAACAAGGTGAAGGTGGTGTTGGAAAACCAGCTTCCGGAGCTGGTATTACATTGGATGGTTCGATGGCTTATAAGTTGATAAAAAGTTGTTATAATGATACTTTTGTGGGGAATTACTTCACTGTTGCTTCCACTAATTGGGTTAATTTTGATGATGTGGAAGTTATTATAGAAAAAGTTTCATATGCAAAGAAAAATGGATTACTTGGTTACAATGTTTTCCAAGTTGGGAATGATGACAATTGGGTCCTTTCAAAGGCAGCTGTCTTTTCAATAACTTGTGTGCTTGTGTTGGTTCGATCCGGTGACTTTGAAGGACTCAAAGAGTTACTGAAACATGTTAACAACGGTGAATCCTCAAATGGGTTATTATCATCAATTTCTGAATTCATGTCCATGCAGAATGATGCTGGAGAGACTTTAATGTATATAGCTGCAGAAAATGGTGTTAAGGATTTGTTCCGTTTCTTGTTAAGTTTCTGTGATTTGGAGATACTCAAAATCAGAGATGTTATTGATGTTGTGGCTCATCCTTATAGAAAAGGTATTAGACATCTCAACATTACTCCGGAAAACATTCTTCTTTTTGGCGATGGTAAGTCTGGCTTGACGGCGGCGAAACTCGCCAATTTCACCTTTCACAAGTCTGTAGATCATGTCTTCTCTTCGAACGAAGGAACTATAGGGTGGAAGAGCCCTGAAAGACTTCATGGACGCCCCGAAGGACTTCCATCGGATATATTTAACCTCACACTGGGGATTTTCCATCTTGTTTCTGGCGGCGGTCATCGATTTGGAAAGATTCAAAATATACAGCAATGTGAAGATAATATCAAGCTTAATCATCCATATTAA 1080 0.3824 MCECLVPQSSLLLATSEHACFKRTLMSYKGACTVINGGIRCDNTDSGIKEWRKRGFSCDKLVIGLPYHGFAWTLVKQGEGGVGKPASGAGITLDGSMAYKLIKSCYNDTFVGNYFTVASTNWVNFDDVEVIIEKVSYAKKNGLLGYNVFQVGNDDNWVLSKAAVFSITCVLVLVRSGDFEGLKELLKHVNNGESSNGLLSSISEFMSMQNDAGETLMYIAAENGVKDLFRFLLSFCDLEILKIRDVIDVVAHPYRKGIRHLNITPENILLFGDGKSGLTAAKLANFTFHKSVDHVFSSNEGTIGWKSPERLHGRPEGLPSDIFNLTLGIFHLVSGGGHRFGKIQNIQQCEDNIKLNHPY 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g05102 359 Gene3D - 67 125 IPR029070 -
Trre10g05102 359 SUPERFAMILY (Trans)glycosidases 39 167 IPR017853 -
Trre10g05102 359 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 1 170 IPR001223 GO:0005975
Trre10g05102 359 PANTHER CHITINASE 43 164 - -
Trre10g05102 359 SUPERFAMILY Protein kinase-like (PK-like) 227 350 IPR011009 -
Trre10g05102 359 ProSiteProfiles Protein kinase domain profile. 71 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g05102 359 Gene3D Glycosidases 42 156 - -
Trre10g05102 359 Gene3D Transferase(Phosphotransferase) domain 1 239 358 - -
Trre10g05102 359 Pfam Glycosyl hydrolases family 18 43 154 IPR001223 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g05102 Trre-Chr10 58187907 58196005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g05102 45 163 Glycoside Hydrolase AT4G19810 42.188 6.51e-26 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Trre10g05102 Glyco_hydro_18 1.2e-12 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g05102 - - tpra:123922687 221.09