Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g05096 ATGAATTCTACTAGGTGCTTGTTGAATTCCAACAGCATAGTTCAATCTTCTTCAAGTTATGCCGAAAGAGAAGATAGAGATGGTAGTTCTAGAAATAGGCCTCAACTTGTCTCATCGCCGCCTTCGTTTTCAGTTCGGATGGCGATGAGAATATCAAGATCAAGATGGTTTACTTTGTTAAGAAGAGTTTTTCATTATCAGAATGGATCAAGGTCTAATCTTGGCTCTAATCCTTTCAATTCTAGTACTTGGTTGATGTTGGAGTTTATTGCTTTGATTGTACAAATAATCGTTTCGACATTCATTTTGGCTATTTCAATGAGGGAGAAACCTGTTTGGCCTATGAGGGTATGGATATCTGGTTATGATATTGGATGTGTTCTTAATCTGCTTATGGTTTATGGCCGCTACCGACAAATTTATCTAATTCAAGGAGATTCTCTTAGTCTTTCTGATATGGAACAGCAGAGAAACAATGAAGAAACAAGGACATCACTGGAGTTTTTCTTTGCCATATGGTTTGTGATGGGAAATGTTTGGTTTTTCGACTCACGTTTTGGTTCATTTCAACAAGCTCCAAAACTTCATGTCCTTTGCATCACATTGCTTACTTGGAATGCAATCTGCTACTCTTTCCCTTTCCTACTTTTTCTTTTGTTATGCTGTTGTGTGCCACTGATCAACACCCTCCTTGGTTACAACATGAACATGGCCTCTTCTAATAAAGGTGCAACTGATGAACAAATTTCACAACTTCCAAGTTGGAGACATAAAGAACCTCATACCAAATTAGAGCCTGCCGATGCCTCTGAAAGCATTGAAAATTTTATCAATGAAGATCCGGAATGTTGCATCTGCTTAGCAAAATACAAAGACGAAGAAGAACTTAGAGAATTGCCATGTTCTCATGTGTTCCACCTAAAATGTGTGGACCAGTGGCTAAAAATTTTATCTTGCTGCCCACTTTGCAAACAAGGATTAGAGAGGTAG 990 0.3828 MNSTRCLLNSNSIVQSSSSYAEREDRDGSSRNRPQLVSSPPSFSVRMAMRISRSRWFTLLRRVFHYQNGSRSNLGSNPFNSSTWLMLEFIALIVQIIVSTFILAISMREKPVWPMRVWISGYDIGCVLNLLMVYGRYRQIYLIQGDSLSLSDMEQQRNNEETRTSLEFFFAIWFVMGNVWFFDSRFGSFQQAPKLHVLCITLLTWNAICYSFPFLLFLLLCCCVPLINTLLGYNMNMASSNKGATDEQISQLPSWRHKEPHTKLEPADASESIENFINEDPECCICLAKYKDEEELRELPCSHVFHLKCVDQWLKILSCCPLCKQGLER 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g05096 329 Pfam Ring finger domain 282 324 IPR001841 -
Trre10g05096 329 SUPERFAMILY RING/U-box 275 327 - -
Trre10g05096 329 ProSiteProfiles Zinc finger RING-type profile. 283 324 IPR001841 -
Trre10g05096 329 MobiDBLite consensus disorder prediction 16 38 - -
Trre10g05096 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 328 IPR013083 -
Trre10g05096 329 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 15 326 - -
Trre10g05096 329 SMART ring_2 283 323 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g05096 Trre-Chr10 58162081 58164249 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g05096 43 327 C3H Transcription Factor Family AT4G26580 64.189 4.22e-132 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g05096 - - gmx:100813670 526.939