Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g05095 ATGAATTCTACTAGGTGCTTGTTGAATTCCAACAGCATAGTTCAATCTTCTTCAAGTTATGCCGAAAGAGAAGATAGAGATGGTAGTTCTAGAAATAGGCCTCAACTTGTCTCATCGCCGCCTTCGTTTTCAGTTCGGATGGCGATGAGAATATCAAGATCAAGATGGTTTACTTTGTTAAGAAGAGTTTTTCATTATCAGAATGGATCAAGGTCTAATCTTGGCTCTAATCCTTTCAATTCTAGTACTTGGTTGATGTTGGAGTTTATTGCTTTGATTGTACAAATAATCGTTTCGACATTCATTTTGGCTATTTCAATGAGGGAGAAACCTGTTTGGCCTATGAGGGTATGGATATCTGGTTATGATATTGGATGTGTTCTTAATCTGCTTATGGTTTATGGCCGCTACCGACAAATTTATCTAATTCAAGGAGATTCTCTTAGTCTTTCTGATATGGAACAGCAGAGAAACAATGAAGAAACAAGGATGCCACACTTGATGAATAAATGCAGGACATCACTGGAGTTTTTCTTTGCCATATGGTTTGTGATGGGAAATGTTTGGTTTTTCGACTCACGTTTTGGTTCATTTCAACAAGCTCCAAAACTTCATGTCCTTTGCATCACATTGCTTACTTGGAATGCAATCTGCTACTCTTTCCCTTTCCTACTTTTTCTTTTGTTATGCTGTTGTGTGCCACTGATCAACACCCTCCTTGGTTACAACATGAACATGGCCTCTTCTAATAAAGGTGCAACTGATGAACAAATTTCACAACTTCCAAGTTGGAGACATAAAGAACCTCATACCAAATTAGAGCCTGCCGATGCCTCTGAAAGCATTGAAAATTTTATCAATGAAGATCCGGAATGTTGCATCTGCTTAGCAAAATACAAAGACGAAGAAGAACTTAGAGAATTGCCATGTTCTCATGTGTTCCACCTAAAATGTGTGGACCAGTGGCTAAAAATTTTATCTTGCTGCCCACTTTGCAAACAAGGATTAGAGAGGTAG 1017 0.3835 MNSTRCLLNSNSIVQSSSSYAEREDRDGSSRNRPQLVSSPPSFSVRMAMRISRSRWFTLLRRVFHYQNGSRSNLGSNPFNSSTWLMLEFIALIVQIIVSTFILAISMREKPVWPMRVWISGYDIGCVLNLLMVYGRYRQIYLIQGDSLSLSDMEQQRNNEETRMPHLMNKCRTSLEFFFAIWFVMGNVWFFDSRFGSFQQAPKLHVLCITLLTWNAICYSFPFLLFLLLCCCVPLINTLLGYNMNMASSNKGATDEQISQLPSWRHKEPHTKLEPADASESIENFINEDPECCICLAKYKDEEELRELPCSHVFHLKCVDQWLKILSCCPLCKQGLER 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g05095 338 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 15 335 - -
Trre10g05095 338 MobiDBLite consensus disorder prediction 16 38 - -
Trre10g05095 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 337 IPR013083 -
Trre10g05095 338 SMART ring_2 292 332 IPR001841 -
Trre10g05095 338 Pfam Ring finger domain 291 333 IPR001841 -
Trre10g05095 338 Coils Coil 150 170 - -
Trre10g05095 338 SUPERFAMILY RING/U-box 284 336 - -
Trre10g05095 338 ProSiteProfiles Zinc finger RING-type profile. 292 333 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g05095 Trre-Chr10 58162081 58164249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g05095 43 336 C3H Transcription Factor Family AT4G26580 65.878 2.30e-139 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g05095 - - gmx:100813670 552.362