Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g05068 ATGAATCCCTTCAAACCAACCCTCTTCACTCTCTTCACCACCTTCATTCTCACCGCCGGTAACATCCAAATAGACTTCCCTTATTTCACAACCACCAACACCGCCACAAACATCACCTTCATCGGCGATTCCTCTCTCAGAAACCGCGTCGTTTCTTTGACTAAATCCACCACTTTCAGCGCCGGTTCTATCATCTATAACAAACCCATTTCTCTCTTTGACATTTCAACAAACACTACGTCTTCATTCTCCACAACCTTCTCTTTTTCCATTACAAACCCCAATAACCCCACTTCATTCGGTGATGGAATTGCTTTCTTCCTCTCCCCCAACAATCTCTCATCATCATCATCATCATCATCATCATCATCATCATCAAGAAGCACATTTGGTCTTCCTATAAATTTTGTTGCTGTTGAATTCGATACTCGTTTTGACCCTCGATTCAATGACCCGAATGAGAATCATATAGGTTTCAATATTGATACATTGAATTCTATGAAAACTGTTGATCCTATTTACAATGGAATTGATCTGAAGAGTGGGAATACTATTACTTCTTGGATTGATTACAAGACTGATGTGAATTCTCTTTCTGTTTTCTTGAGCTATTCTCCGATTAAGCCGCGTAATCCGATTCTTTTTGTAACCGTTGATCTTTCGGAGTATTTTAGAGGTAATGACGGTGTTTACGTTGGTTTTTCTGCTTCTGCTGAAAAAAGTACTGAACTTCATCAAATTGAAAGTTGGAGTTTTTACACTGTTGGGTTTGAACCTGCAAGACCTAGGTTGCGGAGTCATAATGTTTCGGATAATTCTGTTACTGTAAGTACTGGGAATGAGGTACACGTTAATGGGTCGCGTTCGCGTTCATCTTCTTTTTCTACGAAGAAAAGGTTTGGTCTTGGTTTTGCTGTTGCAGGTCCTATTTTTTTCTGTGTTGTTTTTTCATTGTTGGGGTATTATTCTTTTGTGAAATGGAAAGGGGTAAGAATAGGGGTGTCGAAGAATTTCAAAACTGGGTTTGTTGCTTGTCCTAGAGAGTTTAATTACAGAGAATTGAAATCTGCGACACGAGAGTTTCATCCTAGTAGGATCGTTGGTCATGGTTCGTTTGGTACTGTGTATAAAGCTTTCTTTATATCTTCTGGAACCATTGCTGCAGTGAAAAGATCGAGGCATTCTCATGAAGGAAAAACCGAGTTTCTTTCTGAATTGTCTATCATTGCTGGTTTAAGGCACAAAAATTTGGTTCAGTTGTTAGGGTTGAGTTGTGCTAATCCTGATAGTGCTGAGAGACCTACTATGAGAAGAGTATTGCAGATTCTTAACAATGAAGCTGTTCCATTTACTGTTCCAAAAGTGAAGCCAAGCCTTACATTCTCATCTGATTTGCCATTGACTATTGATGAGATTGTTTCTGATGTTGATGATGGTGAGTGTGAAGAGTTCAATACTAGCCAGTCTATGTGTGAGATTAAAATTGAATGA 1491 0.3903 MNPFKPTLFTLFTTFILTAGNIQIDFPYFTTTNTATNITFIGDSSLRNRVVSLTKSTTFSAGSIIYNKPISLFDISTNTTSSFSTTFSFSITNPNNPTSFGDGIAFFLSPNNLSSSSSSSSSSSSSRSTFGLPINFVAVEFDTRFDPRFNDPNENHIGFNIDTLNSMKTVDPIYNGIDLKSGNTITSWIDYKTDVNSLSVFLSYSPIKPRNPILFVTVDLSEYFRGNDGVYVGFSASAEKSTELHQIESWSFYTVGFEPARPRLRSHNVSDNSVTVSTGNEVHVNGSRSRSSSFSTKKRFGLGFAVAGPIFFCVVFSLLGYYSFVKWKGVRIGVSKNFKTGFVACPREFNYRELKSATREFHPSRIVGHGSFGTVYKAFFISSGTIAAVKRSRHSHEGKTEFLSELSIIAGLRHKNLVQLLGLSCANPDSAERPTMRRVLQILNNEAVPFTVPKVKPSLTFSSDLPLTIDEIVSDVDDGECEEFNTSQSMCEIKIE 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g05068 496 SUPERFAMILY Concanavalin A-like lectins/glucanases 14 256 IPR013320 -
Trre10g05068 496 ProSitePatterns Legume lectins beta-chain signature. 137 143 IPR019825 -
Trre10g05068 496 ProSitePatterns Protein kinases ATP-binding region signature. 367 390 IPR017441 GO:0005524
Trre10g05068 496 Pfam Legume lectin domain 25 259 IPR001220 GO:0030246
Trre10g05068 496 PANTHER - 39 422 - -
Trre10g05068 496 CDD lectin_legume_LecRK_Arcelin_ConA 40 256 IPR001220 GO:0030246
Trre10g05068 496 ProSiteProfiles Protein kinase domain profile. 361 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g05068 496 Gene3D - 22 255 - -
Trre10g05068 496 Pfam Protein kinase domain 362 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g05068 496 Gene3D Phosphorylase Kinase; domain 1 333 431 - -
Trre10g05068 496 SUPERFAMILY Protein kinase-like (PK-like) 345 425 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g05068 Trre-Chr10 57957037 57959091 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g05068 420 480 Receptor kinase-like Gene Family AT5G55830 60.656 5.07e-16 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre10g05068 Lectin_legB 1e-53 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g05068 - - adu:107496163 425.631