Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g05067 ATGAATCCCTTCAAACCAACCCTCTTCACTCTCTTCACCACCTTCATTCTCACCGCCGGTAACATCCAAATAGACTTCCCTTATTTCACAACCACCAACACCGCCACAAACATCACCTTCATCGGCGATTCCTCTCTCAGAAACCGCGTCGTTTCTTTGACTAAATCCACCACTTTCAGCGCCGGTTCTATCATCTATAACAAACCCATTTCTCTCTTTGACATTTCAACAAACACTACGTCTTCATTCTCCACAACCTTCTCTTTTTCCATTACAAACCCCAATAACCCCACTTCATTCGGTGATGGAATTGCTTTCTTCCTCTCCCCCAACAATCTCTCATCATCATCATCATCATCATCATCATCATCATCATCAAGAAGCACATTTGGTCTTCCTATAAATTTTGTTGCTGTTGAATTCGATACTCGTTTTGACCCTCGATTCAATGACCCGAATGAGAATCATATAGGTTTCAATATTGATACATTGAATTCTATGAAAACTGTTGATCCTATTTACAATGGAATTGATCTGAAGAGTGGGAATACTATTACTTCTTGGATTGATTACAAGACTGATGTGAATTCTCTTTCTGTTTTCTTGAGCTATTCTCCGATTAAGCCGCGTAATCCGATTCTTTTTGTAACCGTTGATCTTTCGGAGTATTTTAGAGGTAATGACGGTGTTTACGTTGGTTTTTCTGCTTCTGCTGAAAAAAGTACTGAACTTCATCAAATTGAAAGTTGGAGTTTTTACACTGTTGGGTTTGAACCTGCAAGACCTAGGTTGCGGAGTCATAATGTTTCGGATAATTCTGTTACTGTAAGTACTGGGAATGAGGTACACGTTAATGGGTCGCGTTCGCGTTCATCTTCTTTTTCTACGAAGAAAAGGTTTGGTCTTGGTTTTGCTGTTGCAGGTCCTATTTTTTTCTGTGTTGTTTTTTCATTGTTGGGGTATTATTCTTTTGTGAAATGGAAAGGGGTAAGAATAGGGGTGTCGAAGAATTTCAAAACTGGGTTTGTTGCTTGTCCTAGAGAGTTTAATTACAGAGAATTGAAATCTGCGACACGAGAGTTTCATCCTAGTAGGATCGTTGGTCATGGTTCGTTTGGTACTGTGTATAAAGCTTTCTTTATATCTTCTGGAACCATTGCTGCAGTGAAAAGATCGAGGCATTCTCATGAAGGAAAAACCGAGTTTCTTTCTGAATTGTCTATCATTGCTGGTTTAAGGCACAAAAATTTGGTTCAGTTGTTAGGTTGGTGTGTTGAGAAAGGAGAGTTGCTTCTTGTTTATGATTTCATGCCTAATGGAAGCTTAGACAAGATGCTTTACAAGGAACCTGAGAGAGGGAAATTGTTGACTTGGCCTCATAGGGTTAACATTGTTGTTGGTTTGGCTTCTGTTTTGGTTTATCTTCATCAAGAATGTGAGCAAAGAGTGATTCATAGAGATATCAAAACTGCGAATGTTTTGCTGGATGGGAATTTCAATCCTAGGTTGGGTGATTTTGGATTAGCTAAACTCATGGATCATGATAAGAGTCCTGTTTCGACTTTAACTGCTGGAACAATGGGATACCTTGCACCTGAATATCTTCAATACGGGAAAGCAACTGATAAAACCGATGTTTTCAGCTATGGAGTGGTTGTGCTTGAAGTGGCTTGTGGTAAGAGACCTATTGAAAGAGAAGGTCCAAAGATGGTTAATTTGGTGGATTGGGTTTGGGGGTTGTATTCTGAAGGGAAGATAATTGAAGCTGTTGATAAGAGGTTGAATGGTGAATTTGAGGAAGAGGAAATGAGGAAAATTTTGATGTTAGGGTTGAGTTGTGCTAATCCTGATAGTGCTGAGAGACCTACTATGAGAAGAGTATTGCAGATTCTTAACAATGAAGCTGTTCCATTTACTGTTCCAAAAGTGAAGCCAAGCCTTACATTCTCATCTGATTTGCCATTGACTATTGATGAGATTGTTTCTGATGTTGATGATGGTGAGTGTGAAGAGTTCAATACTAGCCAGTCTATGTGTGAGATTAAAATTGAATGA 2055 0.3917 MNPFKPTLFTLFTTFILTAGNIQIDFPYFTTTNTATNITFIGDSSLRNRVVSLTKSTTFSAGSIIYNKPISLFDISTNTTSSFSTTFSFSITNPNNPTSFGDGIAFFLSPNNLSSSSSSSSSSSSSRSTFGLPINFVAVEFDTRFDPRFNDPNENHIGFNIDTLNSMKTVDPIYNGIDLKSGNTITSWIDYKTDVNSLSVFLSYSPIKPRNPILFVTVDLSEYFRGNDGVYVGFSASAEKSTELHQIESWSFYTVGFEPARPRLRSHNVSDNSVTVSTGNEVHVNGSRSRSSSFSTKKRFGLGFAVAGPIFFCVVFSLLGYYSFVKWKGVRIGVSKNFKTGFVACPREFNYRELKSATREFHPSRIVGHGSFGTVYKAFFISSGTIAAVKRSRHSHEGKTEFLSELSIIAGLRHKNLVQLLGWCVEKGELLLVYDFMPNGSLDKMLYKEPERGKLLTWPHRVNIVVGLASVLVYLHQECEQRVIHRDIKTANVLLDGNFNPRLGDFGLAKLMDHDKSPVSTLTAGTMGYLAPEYLQYGKATDKTDVFSYGVVVLEVACGKRPIEREGPKMVNLVDWVWGLYSEGKIIEAVDKRLNGEFEEEEMRKILMLGLSCANPDSAERPTMRRVLQILNNEAVPFTVPKVKPSLTFSSDLPLTIDEIVSDVDDGECEEFNTSQSMCEIKIE 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g05067 684 Pfam Legume lectin domain 25 259 IPR001220 GO:0030246
Trre10g05067 684 Gene3D Phosphorylase Kinase; domain 1 333 436 - -
Trre10g05067 684 Gene3D Transferase(Phosphotransferase) domain 1 437 640 - -
Trre10g05067 684 CDD STKc_IRAK 367 633 - -
Trre10g05067 684 FunFam L-type lectin-domain containing receptor kinase VIII.1 437 649 - -
Trre10g05067 684 Pfam Protein kinase domain 362 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g05067 684 CDD lectin_legume_LecRK_Arcelin_ConA 40 256 IPR001220 GO:0030246
Trre10g05067 684 SUPERFAMILY Protein kinase-like (PK-like) 345 654 IPR011009 -
Trre10g05067 684 Gene3D - 22 255 - -
Trre10g05067 684 SMART serkin_6 361 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g05067 684 ProSitePatterns Legume lectins beta-chain signature. 137 143 IPR019825 -
Trre10g05067 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 483 495 IPR008271 GO:0004672|GO:0006468
Trre10g05067 684 PANTHER - 39 641 - -
Trre10g05067 684 ProSiteProfiles Protein kinase domain profile. 361 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g05067 684 ProSitePatterns Protein kinases ATP-binding region signature. 367 390 IPR017441 GO:0005524
Trre10g05067 684 SUPERFAMILY Concanavalin A-like lectins/glucanases 14 256 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g05067 Trre-Chr10 57957037 57959091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g05067 7 668 Receptor kinase-like Gene Family AT5G55830 56.130 0.0 736
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre10g05067 Pkinase 8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g05067 - - adu:107496163 897.501