Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g05063 ATGAAAACAGTTCTTCCAAAAGGTGCAAAGATAACAAAAACAAGCAAGCAATGTATGGTGGAATGTGCAGCTGAATTCATTAGCTTTGTTACTAGTGAGGCCAAATATTACTGCCAATTGGATCAAAGAAACACAATTACTACTGAAGATTTGATAGATGCTATGCGAAAAGTGGGTCTCAATGTCATCGCTGATTATTCATTCCGCTACTACCAACACTATCGTAACCATGATCATGCTTGTGCGAGCGGTCAATACGCTCCTCCACCACCATCGCTGCCACACGATGTTCATGCTCGTGTTAGCGGCCAATACTATTGTCCTCCTCCACAACCACTACCATCACAAGATGTTCAAGCTCGTTTTAGTCGCCAATATTATGCTCCTCCTCCTCCTCCACCACCGCTGCCATTACAAGATGTTCCAGCTCGCAATTTTTCAATGTCTCCAAATTTCATGTTTCCGAACACAATAGGAACGGGTACATTTTTTGGAGGTGATTATGAAGAACTTCCACCACCACTGCCACAAGATGTTCCAGCTCGTGTTAGCAGCCAATATTATGCTGCTGCTCCTCCTCCACCACCATTGACATTACAGAATGTTCAAGCTCACAATTTTTCAATGGCTGCAAATTTCATGTTTCCGAACCCAATAGAAATGGGTACATTTTTTGGAGGTGATGATGGTGAAGAACTTCCTCCACCACTATTGTCACAAGATGTTCAAGCTTGTGTCAGCGGCCAATATGCACCTCCTCCACCACCACCACCACAGGATGTTCAAGCTCGCTATTTTCCAATGGCTCCAAATTTCATGCTTTCGAATCCAATAGAAATGGGTTCATTTTTTGGAGATGATGATACTGAAGAAGTTCCTCCACCACCACTGCCACAAGATGTTCAAGCTCGTGTCATTGGGCACTACACATCTTCTCCTCCACCACTGGATGTTCAAGCTCGCGATTTTCCAATGGCTCCAAATTTCGAGTTTCCCAACCCAATAGAAATGGGTGCATTTTTTGGAGATGGTGATGGTGAAGAACTTCCTCCACCACCACTACCACAAGATGTTCAAGCTTGTAAATGGGTTCACTTTTTCGAAATGGTGATGGTGAAGAACATGGCGGTGGCTGGTGGTGATGAAGATGGTAGTTCAGATGACGAAGACTTTGATCTTATTGCTTTTCTTAATAGTGATGACTGA 1206 0.4362 MKTVLPKGAKITKTSKQCMVECAAEFISFVTSEAKYYCQLDQRNTITTEDLIDAMRKVGLNVIADYSFRYYQHYRNHDHACASGQYAPPPPSLPHDVHARVSGQYYCPPPQPLPSQDVQARFSRQYYAPPPPPPPLPLQDVPARNFSMSPNFMFPNTIGTGTFFGGDYEELPPPLPQDVPARVSSQYYAAAPPPPPLTLQNVQAHNFSMAANFMFPNPIEMGTFFGGDDGEELPPPLLSQDVQACVSGQYAPPPPPPPQDVQARYFPMAPNFMLSNPIEMGSFFGDDDTEEVPPPPLPQDVQARVIGHYTSSPPPLDVQARDFPMAPNFEFPNPIEMGAFFGDGDGEELPPPPLPQDVQACKWVHFFEMVMVKNMAVAGGDEDGSSDDEDFDLIAFLNSDD 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g05063 401 Gene3D Histone, subunit A 1 85 IPR009072 GO:0046982
Trre10g05063 401 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 1 55 IPR003958 -
Trre10g05063 401 SUPERFAMILY Histone-fold 1 76 IPR009072 GO:0046982
Trre10g05063 401 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 79 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g05063 Trre-Chr10 57943001 57944318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g05063 1 75 CCAAT-HAP3 Transcription Factor Family AT1G09030 45.333 2.00e-15 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Trre10g05063 CBFD_NFYB_HMF 3.2e-11 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g05063 K08065 - tpra:123920747 434.106