Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g05060 ATGGCTGATTCAGACAACGAGTCAGGAGGAGTACCGAACGCCGGTAACAGCGAGTTATCACCACGAGAACAAGATCGATTCCTACCGATAGCGAACGTAAGCAGAATAATGAAAAAAGCGTTACCTGCAAACGCGAAGATCTCGAAAGACGCGAAAGAAACGGTTCAAGAATGCGTATCGGAGTTCATCAGTTTCATTACCGGCGAAGCTTCCGATAAGTGTCAGAGAGAGAAACGAAAGACGATCAACGGTGACGATCTACTTTGGGCGATGACTACGTTAGGATTTGAAGAATATGTTGAACCGTTGAAGATTTATCTTCAACGATTCAGAGAGATCGAAGGTGAGAAAACCGTTGCTGCACGTGACAAAGACGTTGCTCCTTCTTCTTCATCATCTTCTGTTTTCGATTACGGTGCTCCTCCTCAGGTTGGAATGATCATGCATCATCAACATCAGCATCAGGGACACGTGTACGGTTCTGGTGGTTTTCATCAAGTGCCTGGTGGGCCAGGTTATCCTAATGCTGGATCTAATGCGGGTAGACCCAGGTAG 555 0.4649 MADSDNESGGVPNAGNSELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQRFREIEGEKTVAARDKDVAPSSSSSSVFDYGAPPQVGMIMHHQHQHQGHVYGSGGFHQVPGGPGYPNAGSNAGRPR 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g05060 184 MobiDBLite consensus disorder prediction 157 184 - -
Trre10g05060 184 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Trre10g05060 184 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Trre10g05060 184 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Trre10g05060 184 FunFam Nuclear transcription factor Y subunit B-3 16 137 - -
Trre10g05060 184 ProSitePatterns NF-YB/HAP3 subunit signature. 58 74 IPR003956 GO:0005634|GO:0006355|GO:0043565
Trre10g05060 184 Gene3D Histone, subunit A 16 135 IPR009072 GO:0046982
Trre10g05060 184 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 14 147 IPR027113 GO:0001228|GO:0006355|GO:0016602
Trre10g05060 184 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 27 91 IPR003958 -
Trre10g05060 184 SUPERFAMILY Histone-fold 24 156 IPR009072 GO:0046982
Trre10g05060 184 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g05060 Trre-Chr10 57916832 57917386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g05060 1 121 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.777 7.96e-75 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Trre10g05060 CBFD_NFYB_HMF 1.6e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g05060 K08065 - gmx:100813169 268.085