Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g05048 ATGGCCAACAATGATAAAAATGAGCCCTTGCTATCGGGACCACAAGACACTGCAGCTCAAAAGGCTAAAGGACGGTTAAATCAAAGAAGGTTCCTCCGTTCTCGAAGTGCTCCTCATACAGATCATGCTCCTCTGGTGACAAAAGACAACAAATCAATTCCTCTTTCTGAGTCCATATTTGGGAATCTACATCCAAGCTTTAAAAATGTGTTGATAACCCTTACGGTCTATTTAGGTGTAGGAACTTTAATCTTCTACCTTGTCAGGAACCAAATCAAGGGAATGAAAACAGATAGATTCCTTGATGCTTTATACTTTACAATTGTGACAATGACAACTGTTGGATATGGTGACCTTGTTCCGAATAGTGACCTTACAAAACTACTCGCGTGTGCTTTTGTTTTCTCCGGAATGGCGTTGATGGGATTAATCCTAAGTAAAGCAGCAGATTACTTGGTTGAGAAGCAAGAAGTTTTGCTAATTAAAGCCATGCACATGCACCAAAAAGTTGGTCCAGGTGAAATTTTAAAGGAGCTTGAGATCAATAAAACAAGATACAAATTTATTCTAGTCCTTTTCCTTCTTTTGATTCTCGTTATTGTGGGGACAACCTTTTTGGTTACTGTTGAGAAATTTGATTTTATTGATGCCTTGTATTGTGTTTGTTCAACAATTACGACTCTCGGTTATGGAGATAAAAGTTTCTCTACTCAAGCTGGAAGAATATTTGCAGTGTTTTGGATATTAACCGGTACGATTTGTTTAGCTCAGTTTTTCCTCTACATGGCTGAACTAAACACTGAAAGCAGACAAAAGGAACTTGTCAAGTGGGTTCTTACAAGGAAAATGACCAATTTTGATTTGGAAGCTGCAGATCTTGACGAGGATGGCACTGTTGGGGCTGCTGAATTCGTCATTTATAAGCTGAAAGAGATGGGGAAGATTACTCAAGAAGATATAACACTTGTGATGAAAGAGTTTGAAGAGCTTGATGTTGATCAGTCTGGTACACTGTCTAATTCTGATATAACACTTGCTCAATCATCTTAG 1050 0.3838 MANNDKNEPLLSGPQDTAAQKAKGRLNQRRFLRSRSAPHTDHAPLVTKDNKSIPLSESIFGNLHPSFKNVLITLTVYLGVGTLIFYLVRNQIKGMKTDRFLDALYFTIVTMTTVGYGDLVPNSDLTKLLACAFVFSGMALMGLILSKAADYLVEKQEVLLIKAMHMHQKVGPGEILKELEINKTRYKFILVLFLLLILVIVGTTFLVTVEKFDFIDALYCVCSTITTLGYGDKSFSTQAGRIFAVFWILTGTICLAQFFLYMAELNTESRQKELVKWVLTRKMTNFDLEAADLDEDGTVGAAEFVIYKLKEMGKITQEDITLVMKEFEELDVDQSGTLSNSDITLAQSS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g05048 349 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 72 321 IPR003280 GO:0005267|GO:0016020|GO:0071805
Trre10g05048 349 SUPERFAMILY EF-hand 241 345 IPR011992 -
Trre10g05048 349 FunFam Calcium-activated outward-rectifying potassium channel 1 64 159 - -
Trre10g05048 349 Gene3D - 173 276 - -
Trre10g05048 349 PRINTS Two pore domain K+ channel signature 223 251 IPR003280 GO:0005267|GO:0016020|GO:0071805
Trre10g05048 349 PRINTS Two pore domain K+ channel signature 297 306 IPR003280 GO:0005267|GO:0016020|GO:0071805
Trre10g05048 349 Pfam Ion channel 73 153 IPR013099 -
Trre10g05048 349 Pfam Ion channel 195 265 IPR013099 -
Trre10g05048 349 ProSitePatterns EF-hand calcium-binding domain. 331 343 IPR018247 -
Trre10g05048 349 ProSitePatterns EF-hand calcium-binding domain. 292 304 IPR018247 -
Trre10g05048 349 MobiDBLite consensus disorder prediction 1 33 - -
Trre10g05048 349 SUPERFAMILY Voltage-gated potassium channels 69 166 - -
Trre10g05048 349 SUPERFAMILY Voltage-gated potassium channels 181 282 - -
Trre10g05048 349 Gene3D - 64 158 - -
Trre10g05048 349 FunFam Two-pore potassium channel 1 168 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g05048 Trre-Chr10 57863989 57865380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g05048 54 349 Ion Channels AT5G55630 66.216 2.76e-146 416