Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g05037 ATGATGTTGTCTTGTAGAGTTGTTGTTGTTTTGTTTGTTTTGGTTTTTGTTATGATGATTGAGGTGGAATTAGCAGAATGTGGTAATGGGGGTGTTAGGAATTATATTAGTTGGGAAGATTTGATGGTTGATGAACAAAGGTTGGTTTTTAAGAAGAATATTAATAATAATGAAGTTAGAGTTATTGTTGTTGATCAGAATGGAAATGGACATTCTAAAACTGTTCAAGGTGCAGTTGATTTGGTTCCTGATTGGAATCAACACAGAGTCAAAATCTACATTTTTCCAGGAATTTACAGAGAAAGAGTGTTTGTGCCAATCACAAAGCCTTATATATCATTTATAGGCAGAAGAAATGAAACAGCAGGTCCTGTAATTACATGGAACAGTAAATCATCAGATAAAGGTCCAAATGGTCAAACATTAGGAACCTATGGTTCAGCAACTGTAGCAATTGATTCAGATTTTTTCTGTGCAACTGAGGTCACTTTTGAGAACACAGTGGTTGCGTCAGCAGGTGGACAAGGAATGCAAGCAGTGGCACTAAGAGTAAACAGTGATAAAGCAATGTTTTATAGAGTTAAGATTAAAGGAACACAAGACACTCTCTTGGACAACACAGGAACTCACTACTTCTACAGATGTATCATTCAAGGAAAAGTTGATTTCATCTTTGGCAGTGCAAAATCACTCTATGAGAAGTGTAGGCTTCAGTCAATAGCTGAGAACTATGGAGCAATTGCAGCACATCATAGGGATTCACCACTTCAAGATACAGGATTTTCATTTGTAGGATGCAGTATTAGAGGAACAGGAAATGTTTACCTTGGAAGAGCATGGGGTGACTACTCAAGAATAATTTACTCAAATTGTAACATGGATGATATTATTAAACCTGAAGGCTGGTCAGAATGGAATCATCCAGAGAGAAGAAAGACTGCAGTGTTTGGTGAATATAATTGCCATGGAAAAGGAGCAGATAGAATACAAAGGGTTCCTTGGTCAAAATCATTAAGCTATGGAGAAGCAAAGCCTTACTTGGACATTAACTTCATAAATGGAAATCAGTGGCTTAGACTATAG 1083 0.3675 MMLSCRVVVVLFVLVFVMMIEVELAECGNGGVRNYISWEDLMVDEQRLVFKKNINNNEVRVIVVDQNGNGHSKTVQGAVDLVPDWNQHRVKIYIFPGIYRERVFVPITKPYISFIGRRNETAGPVITWNSKSSDKGPNGQTLGTYGSATVAIDSDFFCATEVTFENTVVASAGGQGMQAVALRVNSDKAMFYRVKIKGTQDTLLDNTGTHYFYRCIIQGKVDFIFGSAKSLYEKCRLQSIAENYGAIAAHHRDSPLQDTGFSFVGCSIRGTGNVYLGRAWGDYSRIIYSNCNMDDIIKPEGWSEWNHPERRKTAVFGEYNCHGKGADRIQRVPWSKSLSYGEAKPYLDINFINGNQWLRL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g05037 360 Pfam Pectinesterase 62 355 IPR000070 GO:0030599|GO:0042545
Trre10g05037 360 FunFam Pectinesterase 57 360 - -
Trre10g05037 360 Gene3D - 60 360 IPR012334 -
Trre10g05037 360 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 19 359 - -
Trre10g05037 360 SUPERFAMILY Pectin lyase-like 61 358 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g05037 Trre-Chr10 57780320 57782164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g05037 7 312 Carbohydrate Esterase AT5G55590 57.585 3.04e-131 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g05037 K01051 - gmx:100804220 534.258