Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g05005 ATGTTGGAGCTGGTTTTTGTTTCAACTTCACTCATGAACCATGGAACTGATTTTCTTCTCAAACCCATTTTCCTTCATGGGTTATCTAGTTTACTTCATGTAGTGTTGCTTGTGTCTGTTTTAGTTTCATGGGTTTGGAAAAGAATCACAACTTGTGTTGTGAATGAGTCTAAGGAGGAGAAGAAATTTAATAGTACTTTGTTTAAAGTGACAAAGTTTTGTTCCATTGGTTTTTCTTCTTTCAATTTTGTTTTGCTTTTGTTTAATTATTTTTACTGGTATAGTAATGGTTGGTCAGAAGAAAAAGTTATTACCCTTTTTGATTTAGCTTTAAAAACAGTTTCTTGGTTTGTTATTTGTGTTTGTTTCCTCAAAGGGTTCTTGCTTTTCTTCAGTTCAGGTCAAAGAAAAAGAAGGTTTCCATTCTTATTTAGAGCTTGGTGTGTCTTCTATCTATTTGTTTCATGTTATTGTTTTGTGGTTGACATTGTTGTTTTGTATGAAAATCACATTGAGTTAACTGCTCAATGCTTGGTTTCTGATGTAGTGTCTTTTTGTGTTGGTTTGTTCTTCTGTTATTTGGGGTATTTTGTGAGAAATGAGAGTGAAGAAGGTGATAGAACTATTCAAGAACCTCTTTTGAATGGTGATACACATGTTGGTAATGGTAATGTTAATCCCTTGGAGTTAAAAGAGACTAAAGGGAGTGACACTGTTACTCCTTTTTCAAATGCTGGAATTTTGAGCCTTCTCACTTTCACTTGGGTGGGACCTCTTATAGCATTTGGCAATAAGAAAACCTTAGACCTTGAGGATATTCCTCAATTAGATAGTGGAGATAGTGTGGTTGGAGCTTTTCCAACTTTTAGAAACAAACTTGAAGCTGATTGTGGTGCAGTCAATAGAGTAACAACACTTAAGTTAGTTAAGTCATTGATAATCTCTGGGTGGAAAGAGATTCTTATCACTGCTTTTCTTGCATTGTTAAACACTTTTGCTTCTTATGTTGGTCCTTATCTTATTGATTCTTTTGTTCAATATCTTGATGGAAGAAGGCTATATGAGAATCAAGGCTATGTGTTGGTTTCTGCATTTTTCATTGCAAAGATTGTAGAGTGCTTAACACAGAGGCATTGGTTCTTTAGGTTGCAGCAAATTGGACTTCGATTCCGAGCACTGCTTGTCACTATGATATATAACAAAGCCTTAACACTTTCATGTCAATCAAAACAATGCCACACATCTGGAGAAATTATCAATTTCATGACTGTTGATGCTGAAAGAGTCGGTGTTTTCAGTTGGTACATACATGATTTGTGGTTAGTAGTTTTGCAAGTTACATTGGCGTTGGCCATTTTGTATAAAAATTTGGGGCTTGCTTCCATTGCTGCTTTTGTTACTACTATCATTATTATGCTGGCAAATGTTCCCTTGGGATCATTGCAAGAGAAGTTTCAAAATAAGTTGATGGAGTCAAAGGATACTAGAATGAAAACCACATCTGAAATTTTAAGGAACATGAGGATCCTCAAACTACAAGGATGGGAAATGAAATTTCTATCTAAAATAACTGAGCTTAGGGATGCCGAACAAGGGTGGTTGAAAAAGTTTCTTTATACTTCAGCCTTGACTACATTTGTCTTTTGGGGTGCACCTACATTGGTATCAGTGGTTACTTTTGGTACTTGTATGCTTATAGGGATCCCACTTGAATCAGGGAAGATTCTTTCAGCACTTGCAACAATTAGGATTCTTCAAGAGCCTATTTATAATCTTCCAGATACAATTTCAATGATAGCACAAACTAAAGTTTCTCTCGATAGGATCGCTTCGTTCCTTCGTCTCGATGACTTGCAATCCGATGTAGTTGAAAAGCTTCCTCCAGGAAGTTCTGATACTGCGATTGAAGTGGTTGATGGGAATTTTTCTTGGGATTTATCTTCAACTAGTCCAACTTTGCAGAACATTAATCTGAAAGTTTTTCGTGGCATGAAGGTTGCTGTTTGTGGTACCGTTGGGTCTGGCAAGTCTACTTTACTTTCTTGTGTATTGGGAGAAGTACCAAAGATATCCGGTGTCCTTAAGGTTTGTGGCACAAAGGCTTATGTTGCTCAATCACCATGGATTCAAAGTGGCAAGATAGAGGACAATATATTGTTTGGTGAACACATGGTTAGGGAAAGGTATGAGAAGGTACTTGAAGCATGTTCCTTAAAGAAGGATCTTGAAATCTTGTCATTTGGTGATCAGACGGTTATAGGCGAACGTGGGATAAATTTGAGTGGTGGACAGAAACAAAGAATACAAATTGCTCGCGCTCTTTACCAAGATGCTGATATCTATCTATTTGATGATCCTTTTAGTGCTGTTGATGCTCATACAGGATCTCACCTTTTCAAGGAATGCTTGATGGGCGTTTTAAGTTCAAAAACAGTTGTTTATGTTACTCATCAAGTGGAGTTCTTACCTACTGCTGACCTTATATTGGTCATGAAAGATGGAAAAATTACTCAAAGTGGAAAGTATGCCGATCTGCTCAACATTGGGACCGATTTTATGGAACTCATCGGCGCACACAGAGAAGCTTTGTCTACACTTGAATCATTCGATGGAGGAAAAACATCTAATGAAATAAGTACATTAGAAAAAGATGTAAATATCTCCGGCACTCATGAAGAGGTAAATAAAGATGATCAAAATGGTGATAAAGGAGAACCAAAAGGCCAACTTGTTCAAGAAGAAGAAAGAGAGAAAGGTAAAGTTGGATTTTCAGTCTATTGGAACTATATCACAACTGCATATAGAGGAATTCTTGTACCGTTCATATTATTGGCTCAGATTCTTTTCCAAGCTCTTCAAATTGGAAGCAACTATTGGATGGCTTGGGCAACTCCCATCTCAGCTGACGTGGAGGCACCCGTTGAAGGAACAACTCTTATTGGAGTCTACGTTGTTTTGGCCATTGGAAGTTCTTTCTGCATTCTTGTTAGAGCATTGTTACTTGTTACAGTTGGTTATAAGACAGCCACTATACTCTTCAATAAAATGCACTTGTGCATTTTTCGCGCCCCTATGTCATTTTTTGATTCTACTCCAAGTGGACGAATCCTTAATAGGGCTTCAACCGACCAAAGTGCAGTGGATACTGACATTCCTTATCAAATTGGCTCATTTGCCTTCTCCTTGATCCAACTTCTAGGAATTATAATAGTGATGTCTCAGGTGGCATGGCAAGTTTTCATTGTGTTTGTACCCGTGATAGCAGTTAGCATTTGGTATCAGCGATATTATTTACCATCAGCCCGTGAACTATCACGTTTAAGTGGAGTATGCAAAGCCCCGATCATTCAACACTTTGCCGAAACAATATCCGGTACTTCAACCATTAGAAGCTTTGATCAACAGTCAAGATTCCATGAAACAAATATGAAACTAACTGATGGGTATTCTCGGCCAAAGTTCAATATTGCTGCTGCTATGGAATGGCTATGTTTTCGCTTAGATATGTTGTCTTCCTTCACATTTGCCTTTTCCTTGATATTCTTGATATCGATTCCACCTGGAATCATAAATCCAGGCATTGCTGGTCTAGCGGTTACCTATGGTCTAAATTTAAACATGATACAAGCTTGGGTGATATGGAATCTTTGTAACTTAGAGAACAAAATTATATCGGTGGAAAGGATGCTTCAGTATACAACCATTCCCAGTGAGCCTCCCCTTGTTTTAGAAGAAGAAAAAAGGCCAGATCCTTCTTGGCCCGCATATGGCGAGGTTGATATACGAAACTTGCAGGTTCGATATGCTCCACATCTTCCGCTCGTGTTGCGTGGCCTAACATGTACGTTTCGTGGAGGATTGAGAACAGGCATTGTTGGTAGAACCGGTAGCGGCAAATCAACTCTTATACAAACACTTTTCCGACTCGTTGAACCTACTGCTGGGGAAGTTATCATCGACAACATCAACATTTCTACAATTGGATTGCATGATTTGAGGTCTAGACTAAGCATTATTCCGCAGGATCCAACAATGTTTGAGGGGACTGTGAGAAGTAATCTGGACCCCCTGGAAGAGTACACTGATGAACAAATATGGGAGGCCTTGGATAAGTGTCAACTGGGAGATGAAGTTAGAAAGAAAGAAGGAAAGCTTGACTCTTCAGTTAGCGAGAATGGTGAGAATTGGAGTATGGGTCAGAGGCAGTTGGTTTGCCTTGGTAGGGTTTTGCTTAAGAAGAGCAAGATTTTGGTGCTTGATGAAGCCACTGCATCAGTTGATACAGCTACAGATAATTTGATTCAGCAAACTCTTAAGCAGCATTTCACCGACTCTACAGTCATTACCATTGCGCATCGAATAACTTCTGTTCTTGACAGTGATATGGTTCTACTTCTTAGTCAAGGACTTATTGAGGAGTATGACTCCCCAACCACACTGCTAGAGAATAAGTCATCATCTTTTTCTAAGCTTGTTGCAGAGTATACCATGAGGTCCAACTCCAATTTGTAG 4512 0.3861 MLELVFVSTSLMNHGTDFLLKPIFLHGLSSLLHVVLLVSVLVSWVWKRITTCVVNESKEEKKFNSTLFKVTKFCSIGFSSFNFVLLLFNYFYWYSNGWSEEKVITLFDLALKTVSWFVICVCFLKGFLLFFSSGQRKRRFPFLFRAWCVFYLFVSCYCFVVDIVVLYENHIELTAQCLVSDVVSFCVGLFFCYLGYFVRNESEEGDRTIQEPLLNGDTHVGNGNVNPLELKETKGSDTVTPFSNAGILSLLTFTWVGPLIAFGNKKTLDLEDIPQLDSGDSVVGAFPTFRNKLEADCGAVNRVTTLKLVKSLIISGWKEILITAFLALLNTFASYVGPYLIDSFVQYLDGRRLYENQGYVLVSAFFIAKIVECLTQRHWFFRLQQIGLRFRALLVTMIYNKALTLSCQSKQCHTSGEIINFMTVDAERVGVFSWYIHDLWLVVLQVTLALAILYKNLGLASIAAFVTTIIIMLANVPLGSLQEKFQNKLMESKDTRMKTTSEILRNMRILKLQGWEMKFLSKITELRDAEQGWLKKFLYTSALTTFVFWGAPTLVSVVTFGTCMLIGIPLESGKILSALATIRILQEPIYNLPDTISMIAQTKVSLDRIASFLRLDDLQSDVVEKLPPGSSDTAIEVVDGNFSWDLSSTSPTLQNINLKVFRGMKVAVCGTVGSGKSTLLSCVLGEVPKISGVLKVCGTKAYVAQSPWIQSGKIEDNILFGEHMVRERYEKVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLMGVLSSKTVVYVTHQVEFLPTADLILVMKDGKITQSGKYADLLNIGTDFMELIGAHREALSTLESFDGGKTSNEISTLEKDVNISGTHEEVNKDDQNGDKGEPKGQLVQEEEREKGKVGFSVYWNYITTAYRGILVPFILLAQILFQALQIGSNYWMAWATPISADVEAPVEGTTLIGVYVVLAIGSSFCILVRALLLVTVGYKTATILFNKMHLCIFRAPMSFFDSTPSGRILNRASTDQSAVDTDIPYQIGSFAFSLIQLLGIIIVMSQVAWQVFIVFVPVIAVSIWYQRYYLPSARELSRLSGVCKAPIIQHFAETISGTSTIRSFDQQSRFHETNMKLTDGYSRPKFNIAAAMEWLCFRLDMLSSFTFAFSLIFLISIPPGIINPGIAGLAVTYGLNLNMIQAWVIWNLCNLENKIISVERMLQYTTIPSEPPLVLEEEKRPDPSWPAYGEVDIRNLQVRYAPHLPLVLRGLTCTFRGGLRTGIVGRTGSGKSTLIQTLFRLVEPTAGEVIIDNINISTIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSSVSENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNLIQQTLKQHFTDSTVITIAHRITSVLDSDMVLLLSQGLIEEYDSPTTLLENKSSSFSKLVAEYTMRSNSNL 1503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g05005 1503 Gene3D - 617 870 IPR027417 -
Trre10g05005 1503 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 242 1494 - -
Trre10g05005 1503 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1251 1485 IPR027417 -
Trre10g05005 1503 Pfam ABC transporter 1277 1424 IPR003439 GO:0005524
Trre10g05005 1503 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 321 601 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre10g05005 1503 Gene3D - 1241 1495 IPR027417 -
Trre10g05005 1503 CDD ABCC_MRP_domain2 1257 1477 - -
Trre10g05005 1503 ProSitePatterns ABC transporters family signature. 760 774 IPR017871 GO:0005524|GO:0016887
Trre10g05005 1503 Gene3D ABC transporter type 1, transmembrane domain 299 616 IPR036640 GO:0005524|GO:0016020
Trre10g05005 1503 Gene3D ABC transporter type 1, transmembrane domain 902 1239 IPR036640 GO:0005524|GO:0016020
Trre10g05005 1503 MobiDBLite consensus disorder prediction 889 915 - -
Trre10g05005 1503 CDD ABC_6TM_ABCC_D2 939 1233 IPR044726 GO:0140359
Trre10g05005 1503 FunFam ABC transporter C family member 5 620 867 - -
Trre10g05005 1503 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 632 857 IPR027417 -
Trre10g05005 1503 SMART AAA_5 662 835 IPR003593 GO:0016887
Trre10g05005 1503 SMART AAA_5 1285 1477 IPR003593 GO:0016887
Trre10g05005 1503 SUPERFAMILY ABC transporter transmembrane region 312 614 IPR036640 GO:0005524|GO:0016020
Trre10g05005 1503 FunFam ABC transporter C family member 5 902 1239 - -
Trre10g05005 1503 Pfam ABC transporter 653 787 IPR003439 GO:0005524
Trre10g05005 1503 Pfam ABC transporter transmembrane region 941 1183 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre10g05005 1503 Pfam ABC transporter transmembrane region 321 587 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre10g05005 1503 SUPERFAMILY ABC transporter transmembrane region 938 1240 IPR036640 GO:0005524|GO:0016020
Trre10g05005 1503 CDD ABCC_MRP_domain1 635 835 - -
Trre10g05005 1503 FunFam ABC transporter C family member 10 304 617 - -
Trre10g05005 1503 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1261 1493 IPR003439 GO:0005524
Trre10g05005 1503 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 635 858 IPR003439 GO:0005524
Trre10g05005 1503 FunFam ABC transporter C family member 3 1242 1494 - -
Trre10g05005 1503 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 941 1221 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre10g05005 1503 CDD ABC_6TM_ABCC_D1 322 609 IPR044746 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g05005 Trre-Chr10 57614364 57620518 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g05005 635 865 Calmodulin-binding Proteins AT2G36910 30.315 2.03e-21 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g05005 - K05666 gmx:100811245 2419.04