Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04991 ATGGCTACATTTTCATCTCTTTACCCTTACAATCCTATGCTCTTCGTTCCAACTCCTTCCTCAAATCATTCATTTGCTTCTTCGTTTATGAAACCAACCAAATTCACTGTTCGTTCCTCTCATTCTAATCCCAAAATTCTCAAAACCAACAGAAAATCAATTTATGGAAAAACCCTCTCGCCGTACTATTCCGATGAAGAAGGTGAAGAAATGGATGATGATGATGATGAAGATGATGATGATTGGTTCTCTGATGATGAGGAATTTGCTGAGCCTGCCGATCTTGATAATAAAGCCAAGAGATTGAAGTCAAAGACACTTGCAGATAGACAACAAGAAAAGGAAAAGGAAAAGGGTGTGAGATCTCTTAACAATGGACAAAGCAATAGATTGCCCAAAAGTCGGAGAATAGCATCGTTACAAGAAAATAACAGTGCAAAGTTTGGTAGAAATTCTAAGGAAAGAAGATATCCGGAGTTGTCTGAACTGATTGTTTTGGATGTGAATTGGTTACCACTTCTTGATTACTTAAGCACCTTTGGAATTAAGGAATCACAGTTTCTCCAAATGTATGAGAGGCACATGTCATCGTTTCAAATTAATCTATATTCTGCACAAGAAAGGATTGATTACTTATTGAGTCTTGGGGTTAAACGTACAGATATAAGAAGAATCCTTTTGAGGCAACCGCAAATTCTCGAATATACGGTAGAGAACAATTTGAAGACACGCGTTGCTTTCTTGATGGGTTTGGGCGTACCTAGTTCCAAATTAGGGCAAATTATTACTTCTACTCCGTCCATTTTCTCTTACAGTCTTGAGAACTCGTTAAAACCAACAGTGAGATATTTAATTGAAGAAGTTGGCATCAAGGAAAAAGATTTGGGTAAAGTCATTCAACTGAGTCCTCAAATTCTTGTCCAACGTATTGACATTTCATGGAATACTCGATTTATGTTCCTTACCAAAGAGTTGGGTGCACCAAAGGAGAGCATCGTGAAGATGGTAACGAAACACCCTCAGCTTCTGCATTACAGCATTGATGATGGATTGCTGCCAAGAATAAATTTCTTACGAAGCATAGGAATGAAAAATGCAGACATCTTGAAAATCTTGACTAGCCTTACACAGGTGCTATCTCTGTCCTTGGAGGCTAATCTAAAGCCGAAGTATTTGTACTTGGTAAATGAACTTCACAACGAGGTAAAATCCTTGACTAAATACCCGATGTACCTTAGCTTGTCTTTGGAGCAGAGAATTCGTCCTCGTCATACGTTCTTGGTTTCCCTGAAGAAAGCTCCAATAGGAGGACCATTTCCTCTTGGATCACTAGTTCCAACTGATGAAGCCTTTTGTCAACAGTGGGCTGGTACTACTCTTGATAAATATTTGGCATTTCGCCAGAGATTATTGCTCAAAAAGTTTGCAGATAAATATGACAAAAATGTGAAAAGATAA 1458 0.3827 MATFSSLYPYNPMLFVPTPSSNHSFASSFMKPTKFTVRSSHSNPKILKTNRKSIYGKTLSPYYSDEEGEEMDDDDDEDDDDWFSDDEEFAEPADLDNKAKRLKSKTLADRQQEKEKEKGVRSLNNGQSNRLPKSRRIASLQENNSAKFGRNSKERRYPELSELIVLDVNWLPLLDYLSTFGIKESQFLQMYERHMSSFQINLYSAQERIDYLLSLGVKRTDIRRILLRQPQILEYTVENNLKTRVAFLMGLGVPSSKLGQIITSTPSIFSYSLENSLKPTVRYLIEEVGIKEKDLGKVIQLSPQILVQRIDISWNTRFMFLTKELGAPKESIVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMKNADILKILTSLTQVLSLSLEANLKPKYLYLVNELHNEVKSLTKYPMYLSLSLEQRIRPRHTFLVSLKKAPIGGPFPLGSLVPTDEAFCQQWAGTTLDKYLAFRQRLLLKKFADKYDKNVKR 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04991 485 Gene3D Transcription termination factor 3, mitochondrial 231 470 IPR038538 -
Trre10g04991 485 SMART mt_12 402 433 IPR003690 GO:0003690|GO:0006355
Trre10g04991 485 SMART mt_12 259 291 IPR003690 GO:0003690|GO:0006355
Trre10g04991 485 SMART mt_12 333 364 IPR003690 GO:0003690|GO:0006355
Trre10g04991 485 SMART mt_12 296 328 IPR003690 GO:0003690|GO:0006355
Trre10g04991 485 SMART mt_12 223 254 IPR003690 GO:0003690|GO:0006355
Trre10g04991 485 SMART mt_12 188 218 IPR003690 GO:0003690|GO:0006355
Trre10g04991 485 SMART mt_12 369 401 IPR003690 GO:0003690|GO:0006355
Trre10g04991 485 MobiDBLite consensus disorder prediction 122 147 - -
Trre10g04991 485 MobiDBLite consensus disorder prediction 58 151 - -
Trre10g04991 485 FunFam Transcription termination factor MTERF9, chloroplastic 234 470 - -
Trre10g04991 485 PANTHER CGI-12 PROTEIN-RELATED 173 454 IPR003690 GO:0003690|GO:0006355
Trre10g04991 485 MobiDBLite consensus disorder prediction 93 121 - -
Trre10g04991 485 MobiDBLite consensus disorder prediction 65 92 - -
Trre10g04991 485 Pfam mTERF 165 429 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04991 Trre-Chr10 57514146 57516575 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre10g04991 mTERF 6.3e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04991 K15032 - gmx:100809638 666.766