Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04983 ATGCAAACATCTTTTAAACATAAAATGTCATATGATTCTGACATGTTCAACATCGAGTCTGTACAAAACCTAGACTCATATTGCTTCGTGAAAAATGAGAATCTTGAAAACTACTCATCCTCTGATAACAGTAGCCACTCAACCTACCCTTCATTTCAAGCTTTAGACCAATATTCCAACTTTGAATCTTCTAACAATAGTCCAGTCTCAAAGCTACAGCCAAACTCTTACGCGTTCAATTCGCAAAACTCTCTTGAAATTATCAATGATTTGTTTGAGAACGAACTGTGTTCAACACATACCCAAGATGACTTGTGGCAAAAGACAAGAGAGCTTGAAGATGCTATGTTAGGACATGATGCAGCTGATATTCTCGACATATATAATGACATGGTAATGATTCCAGAAGAATCTGAAACTGATCCGCTTTTGTTAGAGGCAGAAAAGTGGAAGAAAATGATGGAGATGATATCTAGAGGGGATTTGAAAGAAATGCTTTTCACTTGTGCAAAAGCAATATCAGAAAATGATATAGAAACAACTGAATGGTTAATGTCAGAGTTGTCGAAAATGGTTTCGGTTTCAGGCAATCCAATCCAAAGGTTAGGCGCATACATGTTGGAAGCTCTTGTTGCAAGAATAGCTTCTTCAGGAAGCATAATCTACAAATCATTGAGATGTAAAGAACCTAAACCTGCTACTAGTAAAGAACTCCTTTCGCACATGCACGTGCTTTACGAAATTTGTCCTTACCTCAAATTCGGATACATGTCAGCAAATGGAGTAATTGCTGAAGCTATGAAGGATGAAAGTGAAGTTCATATAATTGATTTTCAGATTAATCAGGGAATTCAATGGATAAGTCTAATCCAAGCACTTGCTGGAAAACCTGGTGGACCACCGAAGATTAGAATAACTGGTCTCGACGATTCAACTTCAGCTTATGCTAGAGGAGGAGGGCTTGATATTGTTGGAGAAAGGTTATCAAAACTTGCACAATCATATAATGTAGAATTTGAGTTTCATGCAGTAGGGGCTAATCCTACTGAGGTGAAACTCGAAGACCTTGAAATTCGTCGCGGTGAAGCTATTGCTGTGAATTTCGCTATGATGCTGCACCATTTACCAGATGAAAATGTACATGGTGGTCAAAATCATCGCGACAGGTTGGTGCGACTGGTGAAATGCTTGTCTCCTAAGGTAGTGACTCTTGTTGAGCAAGAATCAAATACCAACGAGCTTCCATTCTTGCCACGTTTCGTTGAGACAATGAACTACTACTTGGCGGTTTTTGAATCGATTGATGTTTCTTTGCCGAGGGAGCACAGAGAAAGGATAAATGTGGAACAGCATTGTTTGGCTCGCGAAGTTGTTAACTTGGTAGCGTGCGAAGGCGCAGAAAGAGTCGAGCGTCACGAGGTTCTGAACAAGTGGAAATCATGTTTCACAATGGCTGGATTCACACCATATCCATTGAGCTCTTATATTAATGGTTCAATAAAGAATCTTCTAGAAAGTTACCAAGGACAATACACTCTAGAAGAGAAAGATGGTGCTCTTTATCTTGGTTGGATGAATCAAGCACTTATTACCTCTAGTGCTTGGAGGTGA 1611 0.3942 MQTSFKHKMSYDSDMFNIESVQNLDSYCFVKNENLENYSSSDNSSHSTYPSFQALDQYSNFESSNNSPVSKLQPNSYAFNSQNSLEIINDLFENELCSTHTQDDLWQKTRELEDAMLGHDAADILDIYNDMVMIPEESETDPLLLEAEKWKKMMEMISRGDLKEMLFTCAKAISENDIETTEWLMSELSKMVSVSGNPIQRLGAYMLEALVARIASSGSIIYKSLRCKEPKPATSKELLSHMHVLYEICPYLKFGYMSANGVIAEAMKDESEVHIIDFQINQGIQWISLIQALAGKPGGPPKIRITGLDDSTSAYARGGGLDIVGERLSKLAQSYNVEFEFHAVGANPTEVKLEDLEIRRGEAIAVNFAMMLHHLPDENVHGGQNHRDRLVRLVKCLSPKVVTLVEQESNTNELPFLPRFVETMNYYLAVFESIDVSLPREHRERINVEQHCLAREVVNLVACEGAERVERHEVLNKWKSCFTMAGFTPYPLSSYINGSIKNLLESYQGQYTLEEKDGALYLGWMNQALITSSAWR 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04983 536 Pfam GRAS domain family 162 536 IPR005202 -
Trre10g04983 536 ProSiteProfiles GRAS family profile. 153 536 IPR005202 -
Trre10g04983 536 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 107 530 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04983 Trre-Chr10 57479655 57481265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04983 1 536 GRAS Transcription Factor Family AT1G50600 56.227 0.0 576
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre10g04983 GRAS 1.3e-132 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04983 - - cam:101502619 864.374