Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04981 ATGGACACTGCCACCACAAACTCCGCCGAACCTCACTGTAGTTCGGAGCTCAGACTTGACGGAGCACCCAATGATCCAAATCGAACTGGGTCGGGTCAAAATTCTATGGCAAGATACAAACTGATGTCTCCGGCGAAGCTTCCGATCTCGAGGTCGCCGTGTATCACAATTCCTCCGGGTTATAGTCCGACGTCGTTTTTGGAGTCTCCAGTTCTTCTTTCTAACATGAAGGTGGAGCCTTCACCGACTACAGGGTCCCTTATTCAAGCTTTACATTGTTCTATGACTTCTGCTGGTTCTCCTACATTTCCTGTAACCTCTGCATGCTTCAATACCAGCACTGTTAATAGCAGAAAATATAGTTTCTTTGAGTTTAAACCACCTGCTAGAAATATGGTTCCTGCAGACTTCAACAACCATGTAAGTGAACAACCTACTCAAGTAGAAGGTCAAGGAAAAGGTCAATCATTTCGATCCTCGCCATTAAATGAAAATGAGAAAGCAGATCAATCTAATGAATTAAGCCTATCATCACCTGTTCAAAGGGTTAGTTCCGTGGCTAGTGCTCCTGTTGATGTCAATTCGGATGAACATAACTACAAAGGAAACACTGCTAATGGGCCTCAATCATCAAATGATGGATACAATTGGCGAAAGTATGGGCAAAAACATGTTAAAGGGAGTGAATTTCCACGTAGCTATTACAAATGTACACATCCTAACTGTGAAGTGAAAAAACTTTTTGAACGCTCTCATGATGGTCAAATCACTGAGATAATTTATAAGGGAACACATGGTCATCCTAAACCTCAACCAAGCAACCGATACTCTGCGGGTTCTGTTATGTCTGTGCAAGGAGATAGATCCGATAATAGGGCATCTTCTTTGGCTGGCCGAGATGACAAAGCATCCAATAATAGTCCTGAGCAATCAACCGTTGCAGCCAATGATCTTAGTCTAGATGGTGCTGGATTTCCGTCGACCAGAACAAACGATGAGATTGATGATGACGATCCTTTCTCAAAGCGAAGAAAAATGGAACTCGGAAACACTGATATCATTCCTGTAGTTAAGCCTATCCGAGAGCCACGGGTTGTTGTACAGACTATGAGTGAAATTGATATATTAGATGATGGATACCGTTGGCGTAAGTATGGGCAGAAGGTGGTGAGAGGAAATCCTAACCCAAGGAGTTATTACAAATGCACAAATGCCGGGTGCCCCGTTAGGAAACACGTGGAGAGGGCATCACATGATCCGAAAGCTGTAATAACAACATACGAGGGGAAACACAATCATGATGTACCTGCTGCGAAGAGTAGTAGCCATGACATGGCAGGATATGCAGCTTCAAAGATAAAGTCAGAGGAAAGTGATACTATTAGTCTTGACCTCGGGATGGGAATCACCTCTCCAGCTGAAAATAGATCAAACGGGCAAGGAAAAATGCTGCTCTCCGAATTCGGGAATAACAGTCAAACTCACACAAGCAATTCCAATTTCAAGTTTGTTCATACAACCTCAGGTCCAGTATACTATGGTGTTCTAAATAACGGTTCAAATCCATTTGGTTCGAGAGAAAATAGGAATGATGGTTCGTCTATAAACTATTCCTCGTATCCTTACTCACAGAACATGGGAAGAATACTAATGGGACCATGA 1662 0.429 MDTATTNSAEPHCSSELRLDGAPNDPNRTGSGQNSMARYKLMSPAKLPISRSPCITIPPGYSPTSFLESPVLLSNMKVEPSPTTGSLIQALHCSMTSAGSPTFPVTSACFNTSTVNSRKYSFFEFKPPARNMVPADFNNHVSEQPTQVEGQGKGQSFRSSPLNENEKADQSNELSLSSPVQRVSSVASAPVDVNSDEHNYKGNTANGPQSSNDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHGHPKPQPSNRYSAGSVMSVQGDRSDNRASSLAGRDDKASNNSPEQSTVAANDLSLDGAGFPSTRTNDEIDDDDPFSKRRKMELGNTDIIPVVKPIREPRVVVQTMSEIDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPAAKSSSHDMAGYAASKIKSEESDTISLDLGMGITSPAENRSNGQGKMLLSEFGNNSQTHTSNSNFKFVHTTSGPVYYGVLNNGSNPFGSRENRNDGSSINYSSYPYSQNMGRILMGP 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04981 553 SMART WRKY_cls 376 435 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre10g04981 553 SMART WRKY_cls 211 269 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre10g04981 553 FunFam WRKY transcription factor 33 363 429 - -
Trre10g04981 553 MobiDBLite consensus disorder prediction 144 219 - -
Trre10g04981 553 SUPERFAMILY WRKY DNA-binding domain 368 436 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre10g04981 553 SUPERFAMILY WRKY DNA-binding domain 210 270 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre10g04981 553 FunFam WRKY transcription factor 200 271 - -
Trre10g04981 553 Pfam WRKY DNA -binding domain 377 433 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre10g04981 553 Pfam WRKY DNA -binding domain 212 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre10g04981 553 MobiDBLite consensus disorder prediction 270 317 - -
Trre10g04981 553 MobiDBLite consensus disorder prediction 144 217 - -
Trre10g04981 553 MobiDBLite consensus disorder prediction 1 36 - -
Trre10g04981 553 ProSiteProfiles WRKY domain profile. 371 436 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre10g04981 553 MobiDBLite consensus disorder prediction 262 346 - -
Trre10g04981 553 ProSiteProfiles WRKY domain profile. 212 270 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre10g04981 553 Gene3D WRKY domain 361 437 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre10g04981 553 Gene3D WRKY domain 197 271 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre10g04981 553 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 69 473 IPR044810 GO:0003700
Trre10g04981 553 MobiDBLite consensus disorder prediction 330 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04981 Trre-Chr10 57469369 57473007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04981 42 553 WRKY Transcription Factor Family AT4G26640 55.680 0.0 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre10g04981 WRKY 1.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04981 - - gmx:100816583 853.203