Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04978 ATGATGCCAAGTGTTAACCCCGATTCATCCGACAAAGATTCGGAGGCATTCGAGGAAATGGATCCAACTGGTCGATATGGTAGATATAGCGAACTATTAGGATGTGGTGCCGTGAAGAAAGTGTACCGTGCATTCGATCAAGAAGAAGGAATAGAGGTAGCATGGAACCAAGTGAAGCTAAGGAACTTCTGTGATGACTCTGCTATGGTGAAAAGGCTTTACTCTGAAGTGAGGTTATTGAGAAGCTTATCAAACAAAAACATCATTGAACTTTATAGTGTTTGGAGCAATGATCAAAAGAACACACTCAATTTCATCACCGAGGTTTGTACTAGTGGGAATTTGAGAGAGTATAGGAAGAAACATAGGCATGTTTCGATGAAGGCTCTGAAGAAATGGTCGAGGCAGATTTTGAGAGGGTTGAATTATTTGCATACTCATGAGCCTTGCATCATTCATAGAGATCTCAATTGCAGCAATGTGTTTGTTAATGGGAATGTTGGCAAGGTTAAAATCGGTGACTTGGGTTTAGCAGCAATTGTTGGGAAGAATCATGTTGCACACACAATTCTTGGTACACCGGAGTTTATGGCACCGGAATTATACGACGAAGACTACACAGAATTGGTGGACATATACTCATTTGGAATGTGTGTGTTAGAGATGGTCACAGTGGAAATTCCTTATAGCGAATGTGACAATGTTGCAAAGATTTACAGGAAAGTGTCTTCCGGTATAAGACCCGCTGCATTGAACAAGGTCAAAGATCCCGAGGTAAAGGACTTCATTGAGAGGTGTCTTGCTCAACCAAGGGCTCGACCTTCTGCTGCTGAGCTTCTCCAAGATCCTTTCTTTGATGAACTTGTCGGTGAAGATGATGACGATGATGACGAAAATGCTGATCAAGTTTGTTCATACTAA 921 0.4169 MMPSVNPDSSDKDSEAFEEMDPTGRYGRYSELLGCGAVKKVYRAFDQEEGIEVAWNQVKLRNFCDDSAMVKRLYSEVRLLRSLSNKNIIELYSVWSNDQKNTLNFITEVCTSGNLREYRKKHRHVSMKALKKWSRQILRGLNYLHTHEPCIIHRDLNCSNVFVNGNVGKVKIGDLGLAAIVGKNHVAHTILGTPEFMAPELYDEDYTELVDIYSFGMCVLEMVTVEIPYSECDNVAKIYRKVSSGIRPAALNKVKDPEVKDFIERCLAQPRARPSAAELLQDPFFDELVGEDDDDDDENADQVCSY 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04978 306 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 11 288 - -
Trre10g04978 306 Gene3D Phosphorylase Kinase; domain 1 10 108 - -
Trre10g04978 306 Gene3D Transferase(Phosphotransferase) domain 1 110 290 - -
Trre10g04978 306 FunFam Probable serine/threonine-protein kinase WNK1 11 108 - -
Trre10g04978 306 SUPERFAMILY Protein kinase-like (PK-like) 21 286 IPR011009 -
Trre10g04978 306 FunFam probable serine/threonine-protein kinase WNK9 110 290 - -
Trre10g04978 306 MobiDBLite consensus disorder prediction 1 21 - -
Trre10g04978 306 CDD STKc_WNK 25 285 - -
Trre10g04978 306 MobiDBLite consensus disorder prediction 287 306 - -
Trre10g04978 306 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04978 306 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04978 Trre-Chr10 57437599 57439577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04978 6 289 MAP Kinase Kinase Kinase AT5G55560 79.225 3.11e-178 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Trre10g04978 Pkinase 3.9e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04978 K08867 - gmx:100816060 530.791