Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04977 ATGTTATGTTCAGGAGGTGAGTTATCATCATCAGAGTCTCATTCTTTCTATAGTTTCCTAAAAGCTATTGATCACAATAATGTACTTAACATTAGCAAGATATCATATCCATGTTTGATCAATGGTGTAAGATGCAATTCAAATGCTACAAATATTGTAGAGATAAGGCTTGATAACATGAACCTTAGTGGCATATTTGATGCATATTCACTATGTAGACTCCAAAAGCTAAAAGTGGTTAGTTTAGCAAACAATAATATCAAAGGGACTATTTCAAGCTCAATTTTGCATTGTAGAAGATTGGTACATTTAAATGTAACAAATAATCAATTGAGTGGTAGGTTACCAAAGTCTTTAAGAAGATTGAAATATCTTAAGAACTTAGATGTATCTAAGAATAATTTTTCTACTAATTATATGGCTCAAATTAGTAAGTTAGAGAGCATAAGTGATTTAGATCATACAATACAACCAACACCAAGTCTTTTAACTTCCAATAACACATCTAAAAAACCAAGACCATGGTATGAAAATATTGAAATCTTGTTAGGGTTGGGTTTGGGAGTTGGATTGCTTTTATTATCACTCTACTTTATGGTAAAGAAATCTTCCAAATTAATTGAAGAGATTGAGCTGAAGAAAAACCATCTTGATTCTCCTATAAAAAAGCCTACAATTCAAGAGGTGAAATTAAAAGGAGATAATTGTAATTCAGAACTTGTGTTCTTTGTTGAAGATCATGAAAGGTTCAAACTTGAGGATTTATTAAGAGCTAAAGCTGATTTGAGAAGTGAAAATTTTTGGAGTAGTCTTTTCAAGGTGAAACTTGAGAATAAAGTTGAATATGCTGTCAAAAGATTGAAGAATATGCAGGTATCTTGTGATGAATTTGAAGAAACATTGAGGAAGATAAGTAAAGTGAAACATCAAAATATTCTCCCCCTTGTTGGTTATCGTTCTACCAATGAAGAAAAACTTATCATTTACAAATATCAAAGCAATGGAAGTTTGCTCAATCTCTTAAATGATTATATAGCAAGAAGAAAAGATTTCCCATGGAAACTTCGTCTCAATATAGCATGCGGAATCGCAAGGGGATTAGCATTCATTTATAAGAAATTGGATGAAGGGGAGGCCAATATTATTCCTCATGGAAACATCAAGCTATCAAATATTCTTCTAAATGACAAAAATGAAGCACTAATAGGTGAACATGGTTTATCGAAATTCTTTGAACCACATAGAGGTACTAATCTCTTTTCCTCTGATGGATACACAGCTCCTGAAAAGAGTTTAACCGAAAAAGGCGATGTATATAGCTTCGGAGTGATTCTACTAGAACTACTAACAGGACAAAGCATAGAAGTTAGTAGAATAGACCTTGTTAGATGGGTGAGGTCAATGGTGAGAGAAGAATGGACAGGTGAAGTGTTTGACAAGGAAGTTAGAGAAAATGATCATCAAGGTGCATTTTCATTGTTGAATATTGCTCTCTTGTGTGTGTCGCGTTCTCAAGAAAATAGGCCAAATGTTGAAGAAATTTTGAACACAATTGAAGGTGTGATGAATGCACATGAACAACAACAACAACAGATGGAACTTTCTGCTTCAAAATGTTGTTCTAATGGAACCAATCAAGAATGTTGTTCACTTCATCAAATCATACCTGATACATGGGATTCTCCTGGATCAAATTATTGA 1701 0.3304 MLCSGGELSSSESHSFYSFLKAIDHNNVLNISKISYPCLINGVRCNSNATNIVEIRLDNMNLSGIFDAYSLCRLQKLKVVSLANNNIKGTISSSILHCRRLVHLNVTNNQLSGRLPKSLRRLKYLKNLDVSKNNFSTNYMAQISKLESISDLDHTIQPTPSLLTSNNTSKKPRPWYENIEILLGLGLGVGLLLLSLYFMVKKSSKLIEEIELKKNHLDSPIKKPTIQEVKLKGDNCNSELVFFVEDHERFKLEDLLRAKADLRSENFWSSLFKVKLENKVEYAVKRLKNMQVSCDEFEETLRKISKVKHQNILPLVGYRSTNEEKLIIYKYQSNGSLLNLLNDYIARRKDFPWKLRLNIACGIARGLAFIYKKLDEGEANIIPHGNIKLSNILLNDKNEALIGEHGLSKFFEPHRGTNLFSSDGYTAPEKSLTEKGDVYSFGVILLELLTGQSIEVSRIDLVRWVRSMVREEWTGEVFDKEVRENDHQGAFSLLNIALLCVSRSQENRPNVEEILNTIEGVMNAHEQQQQQMELSASKCCSNGTNQECCSLHQIIPDTWDSPGSNY 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04977 566 SUPERFAMILY Protein kinase-like (PK-like) 270 518 IPR011009 -
Trre10g04977 566 Coils Coil 511 531 - -
Trre10g04977 566 SUPERFAMILY L domain-like 36 181 - -
Trre10g04977 566 Pfam Protein tyrosine and serine/threonine kinase 275 517 IPR001245 GO:0004672|GO:0006468
Trre10g04977 566 PANTHER OS05G0588300 PROTEIN 11 153 - -
Trre10g04977 566 Gene3D Phosphorylase Kinase; domain 1 224 331 - -
Trre10g04977 566 Gene3D Ribonuclease Inhibitor 12 181 IPR032675 -
Trre10g04977 566 Gene3D Transferase(Phosphotransferase) domain 1 333 546 - -
Trre10g04977 566 ProSiteProfiles Protein kinase domain profile. 257 522 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04977 Trre-Chr10 57430604 57432675 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04977 2 519 Receptor kinase-like Gene Family AT5G53320 31.533 9.48e-73 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre10g04977 PK_Tyr_Ser-Thr 1.9e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04977 - - gmx:100807491 718.383