Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04959 ATGCCGGATGCAGATCAGTTATTGGAGAAAAGAGTACGATCTCGTTTTTCACACAGAAATCTGTTGTTCTTACCACCTTCAATAGAAGATTTGCAAAGATTATTGGCGCATATTCTGACATTACCAATAGATTTGGGCCTTCCACATGATTACACTGTTGAATTTAATAAAAGGGTTCAAAATATTATAGAAGACAAAAAGTTCAAAGAAATCTTCAACAAACATTTGAATTTTGACTCCTCTGTCAAAAATTTGTTGAGGTTCCTATTCTACGCAGTCTCTCATATGGATTTGCAGACTGGGTTTCTTTCCCGGGAAAACTTTGAAACTGCATTTTCAAGCATCCAGAGACAGCCCAAACTGGAATGTTTAAGAAATTGCTCCATTTTAGAACTTTATATTTTGGTATGCATGAAGAGATTGGAAGTTAAAGAGCAAAGTTTATGTAACTTCAACACTGTAATGAAAGTGTATAAAAGCATTCATGATTCTTTCCAGACTTCTGACTACTGTGCACGGAAGGAATGTTTGTTTACGGGCATTTGA 546 0.3553 MPDADQLLEKRVRSRFSHRNLLFLPPSIEDLQRLLAHILTLPIDLGLPHDYTVEFNKRVQNIIEDKKFKEIFNKHLNFDSSVKNLLRFLFYAVSHMDLQTGFLSRENFETAFSSIQRQPKLECLRNCSILELYILVCMKRLEVKEQSLCNFNTVMKVYKSIHDSFQTSDYCARKECLFTGI 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04959 181 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 4 3 177 IPR016527 GO:0000808|GO:0003677|GO:0005634|GO:0006260
Trre10g04959 181 Pfam Origin recognition complex (ORC) subunit 4 C-terminus 37 168 IPR032705 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04959 Trre-Chr10 57320103 57321755 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04959 3 177 Core DNA Replication Machinery Family AT2G01120 58.564 4.16e-69 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04959 K02606 - gmx:100800582 268.855