Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04943 ATGGGAAAGTTGCCTAAGAATTGCTGCAATTCAGGAGAGATAAAACCAAGTAACATAGTCCTCGACAACAAGTTTAGTGCCAAAGTGTCTGATTTTGGAACATCTAGATCAATTCCACTCGATAAGACTCATTTAACCACAGCTGTAGGAGGTACGATGGATCCTGAATATTTTCAATCAAGTCAATTTACAGATAAGAACGATGTATATAGTTTCAGCATTGTGCTTGTAGAGCTTATAACCGGCAGAGAGCTGATAACATTAAATGATGAAGATGAAAGTCAGAATATGACAGCACATTTCATTTCTGTGACGAAGGACAACCAACTTTCTCAGATTCTAAGTGCCACAGTGATTAAGGAAGCAAGGAAATATGTCTTGCCTGATTATGCTCACGATGGCCACCATATGTTTTATGAAAATTACATCAAACAAATCTATGGGGTTCTCATTGAAAGAAGAGTTGAAACTAACCATTATCATGATTCACGAGCTTGA 498 0.3735 MGKLPKNCCNSGEIKPSNIVLDNKFSAKVSDFGTSRSIPLDKTHLTTAVGGTMDPEYFQSSQFTDKNDVYSFSIVLVELITGRELITLNDEDESQNMTAHFISVTKDNQLSQILSATVIKEARKYVLPDYAHDGHHMFYENYIKQIYGVLIERRVETNHYHDSRA 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04943 165 ProSiteProfiles Protein kinase domain profile. 1 139 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04943 165 Pfam Protein kinase domain 14 105 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04943 165 Gene3D Transferase(Phosphotransferase) domain 1 3 146 - -
Trre10g04943 165 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 12 122 IPR045274 GO:0007166
Trre10g04943 165 SUPERFAMILY Protein kinase-like (PK-like) 14 137 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04943 Trre-Chr10 57226129 57226626 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04943 13 118 Receptor kinase-like Gene Family AT1G69730 55.963 3.62e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Trre10g04943 Pkinase 1.2e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04943 - - gmx:100795455 160.999