Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04907 ATGGCCGAAAAAGCAAAGCGTCTCATAATCGGAATCGACCTCGGCACCACCTACTCTTGCGTCGGAGTCTGGCGCCATGGCAGTGTCCAAATCATTACCAACGACCACGGCAACCGGACCACCCCTTCTTACGTCGCTTTCACAGACTCGGAACGCTTCATTGGCGATGCTGCCAAGAGCCAGGTCACCAGGAACCCCGTCAACACAGTTTTCGATGCAAAGCGTTTGATTGGAAGGAGATTCTCTGATGCTTCCGTTCAGAGTGACATGAAGCTATGGCCATTCAAGGTTATTGCTGGTACTTCCGACAAGCCCATGATTGTTGTTAACTACAAGAATGAGGAGAAGCACTTCACTGCTGAGGAGATATCCTCCATGGTCCTCATCAAGATGCGTCAGATCGCGGAGGCTTATCTTGGTGCCACCGTGAAGGACGTTGTTGTCACTGTTCCAGCATACTTCAATGACTCTCAGCGCCAGGCCACCAAGGATGCTGGTGTTATTGCTGGCCTTAATGTCGTGCGTATCATCAACGAACCCACTGCTGCTGCCCTTGCCTATGGCCTTGATATGGAGACCATCATTGATGATGATGAGACGAACGTTTTGATTTTTGACCTTGGTGGTGGTACTTTTGATGTCTGTCTTCTAGCCATTGAAGATAGTGTCTTTGTAGTTAATGCCACTGCAGGAAACAGCCATCTTGGAGGTGAAGACTTCGATAACAGGATGGTTGACAATTTTGTTCAGGAGTTCAAGAGGAAGCACGAGAAGGAAATTAGTGGGAACCCGAGGGCTTTAAGAAAGTTGAGGACCGCATGTGAAAGGGCAAAGAGGATACTCTCATCCACTCTACAGACCACCATTGAGATTGACTCATTGTATGAAGGTATTGACTTCTATACTACAATCACTCGTGACAAATTTCAAGAACTCAACATGGACCTCTTCAGCAACTGCATGGACACTGTTGAGCGGTGTTTGAGGGAAGCTAAAATGGACAAGAGCAGTGTCCATGATATTGTTCTTGTTGGTGGGTCTACGAGGATCCCAAAAGTGCAACAGTTGTTGCGGGATTTCTTCAATGGGAAGGAGCTCTGCAAGAGCATCAACCCAGATGAGGCTGTTGCTTATGGAGCCGCTCTTCAGGCTGCTATCTTGAACCATGAGGAGAACGAGAAGGTTAAGGATCTTACGTTGGTGGATGTCACTCCCCTTTCACTTGGTGTGGAAACTGTTGGCGGTGTCATGACTGTCCTGATTCCAAAGAACTGTTCACTCCCGTACAAGCAGGAGCAGGTTTTCTCAACGTACTCCGACAACCAGCTTAGTGTCTTGATCAGGGTGTACGAGGGTGAGAGAACCAGGAGCAGGGACAACAACTTGCTAGGTAAATTCGAGCTCTCTGGCATCCTTCCTGCTCCAAAGGGTGTTCCTAAGATCGAAGTTTGCTTTACCATTGATGTCAATGGTATCATGACTGTCTCTGCTGAGGACAGGGGTACAGGGAAGAAGAACAATATCACTATCACCAATGACAAGGGCAGGCTCTCGAAGGAGGAGATTGAGAAGATGGTGCAGGAGGCGGAGAAGTACAAGGTTGAGGATGAGGAGCACAAGAAGAACGTTGAGGCCAAGATTGCCTTGGAACAAGAGGTGGAGAGGTGTAAACCCTTCTGTTTTACAAAAGATGCTCCAGATCAACACTCAGAGGCACAAGTAGAACATGATACTTGCCATGATCCGATTACATTAGCATCCCTAAGTTCAAGTTTACAGTCTTTCCCTTCCAGAAACTCTGGTTATTATTTCAACTCTACAAAAGTGGCTTCACAAAAAATTACAAAGGGACTTAAAGACGATAATTGCTATGTTATTGGATTGTATGGAAAGAGAGGCTGTGGTAAAACAGCATTGGTGAAAGCTAAGATGGAAGAGTATGAAAAGATTTTCCATAGAGTGATATTTCAACCGGTGTCTGAGAATCAAGATATCAAGAGCATTCAAGTGGGAATTTCTAGGTCCTTGAATGTGTTTGATAAAGATGACAGTGATGGTGCGAGAATAGTGAAAATAATTTCGGCATTAGAAAAAAAGGATAGAACTACCCTAGTCATCTTGGATAATTTTCCATCAAGGTCTAAACTGGAAGAATTGGGAATTCCTTATAATAGCAAACAGTACAAGTTCCTTTTGACCGCACGTGAAGAGACAGATTGCACCTTAATGGGATGTGATCATTTGATTCTTCTGAAGCCCTTATCTGATGAAGAAGCTTTTACCCTCCTACATAAACTGTCCGGTGTTGAATCCCAAACTGATCTATTTAAATTGGTACGGGATGTTGCTTTTAAATGCAATGGCTTACCTGGTTTAATTAAAGATGTGGCGTTTTCCTTGAAAAAGAAGCCTATTGAGAAGTGGGAAGAATCCTTATTGGGCAAAGATTCTAAGACGGTATTGGAATGGACATTAGCTTTGAATGATATTTCCCGATTGAAAGGAGAACATTTCCGCATTTCCAACTTCAAAGGAGAGCATTACGAAAGTTTGGCTGATCCTTCTGCCAATATTATATTTGGAGCTGTTGTTGATGATCGTTACACCGGAGAGATTCATGTGACTATCATTGCCACTGGCTTTTCGCAGTCTTTTCAGAAGAAGCTACTAACAGATCCAAGGGCTGCAAAACTTCTTCACAAAGTGGCCGAGGGAAAAGAAAGTAAGACAGTGCCCTCTCTCCTCAAGTCCTCAAACTTATCTTCCTTGTCAGTTATCATTTTATTGTAG 2790 0.4441 MAEKAKRLIIGIDLGTTYSCVGVWRHGSVQIITNDHGNRTTPSYVAFTDSERFIGDAAKSQVTRNPVNTVFDAKRLIGRRFSDASVQSDMKLWPFKVIAGTSDKPMIVVNYKNEEKHFTAEEISSMVLIKMRQIAEAYLGATVKDVVVTVPAYFNDSQRQATKDAGVIAGLNVVRIINEPTAAALAYGLDMETIIDDDETNVLIFDLGGGTFDVCLLAIEDSVFVVNATAGNSHLGGEDFDNRMVDNFVQEFKRKHEKEISGNPRALRKLRTACERAKRILSSTLQTTIEIDSLYEGIDFYTTITRDKFQELNMDLFSNCMDTVERCLREAKMDKSSVHDIVLVGGSTRIPKVQQLLRDFFNGKELCKSINPDEAVAYGAALQAAILNHEENEKVKDLTLVDVTPLSLGVETVGGVMTVLIPKNCSLPYKQEQVFSTYSDNQLSVLIRVYEGERTRSRDNNLLGKFELSGILPAPKGVPKIEVCFTIDVNGIMTVSAEDRGTGKKNNITITNDKGRLSKEEIEKMVQEAEKYKVEDEEHKKNVEAKIALEQEVERCKPFCFTKDAPDQHSEAQVEHDTCHDPITLASLSSSLQSFPSRNSGYYFNSTKVASQKITKGLKDDNCYVIGLYGKRGCGKTALVKAKMEEYEKIFHRVIFQPVSENQDIKSIQVGISRSLNVFDKDDSDGARIVKIISALEKKDRTTLVILDNFPSRSKLEELGIPYNSKQYKFLLTAREETDCTLMGCDHLILLKPLSDEEAFTLLHKLSGVESQTDLFKLVRDVAFKCNGLPGLIKDVAFSLKKKPIEKWEESLLGKDSKTVLEWTLALNDISRLKGEHFRISNFKGEHYESLADPSANIIFGAVVDDRYTGEIHVTIIATGFSQSFQKKLLTDPRAAKLLHKVAEGKESKTVPSLLKSSNLSSLSVIILL 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04907 929 Gene3D - 71 126 - -
Trre10g04907 929 Gene3D - 10 385 - -
Trre10g04907 929 Gene3D - 839 893 IPR037103 -
Trre10g04907 929 Gene3D - 753 834 IPR042197 -
Trre10g04907 929 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 612 812 IPR027417 -
Trre10g04907 929 Coils Coil 522 542 - -
Trre10g04907 929 FunFam Heat shock cognate 70 kDa protein 2 320 367 - -
Trre10g04907 929 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Trre10g04907 929 FunFam Heat shock 70 kDa 392 546 - -
Trre10g04907 929 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 393 550 IPR029047 -
Trre10g04907 929 SUPERFAMILY Tubulin C-terminal domain-like 849 888 IPR008280 -
Trre10g04907 929 SUPERFAMILY Actin-like ATPase domain 7 191 IPR043129 -
Trre10g04907 929 ProSitePatterns Heat shock hsp70 proteins family signature 3. 341 355 IPR018181 -
Trre10g04907 929 PRINTS 70kDa heat shock protein signature 210 220 - -
Trre10g04907 929 PRINTS 70kDa heat shock protein signature 338 354 - -
Trre10g04907 929 PRINTS 70kDa heat shock protein signature 146 166 - -
Trre10g04907 929 PRINTS 70kDa heat shock protein signature 397 416 - -
Trre10g04907 929 PRINTS 70kDa heat shock protein signature 478 494 - -
Trre10g04907 929 PRINTS 70kDa heat shock protein signature 8 21 - -
Trre10g04907 929 PRINTS 70kDa heat shock protein signature 36 48 - -
Trre10g04907 929 PRINTS 70kDa heat shock protein signature 370 390 - -
Trre10g04907 929 PRINTS 70kDa heat shock protein signature 58 66 - -
Trre10g04907 929 SUPERFAMILY Actin-like ATPase domain 197 387 IPR043129 -
Trre10g04907 929 Pfam Hsp70 protein 9 563 IPR013126 GO:0005524|GO:0140662
Trre10g04907 929 FunFam Heat shock 70 kDa protein 71 126 - -
Trre10g04907 929 PANTHER HEAT SHOCK PROTEIN 70KDA 10 557 IPR013126 GO:0005524|GO:0140662
Trre10g04907 929 FunFam Heat shock 70 kDa 236 319 - -
Trre10g04907 929 Gene3D - 587 747 IPR027417 -
Trre10g04907 929 CDD HSPA1-2_6-8-like_NBD 10 388 - -
Trre10g04907 929 FunFam Heat shock protein 70 10 201 - -
Trre10g04907 929 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 386 564 IPR029047 -
Trre10g04907 929 Gene3D - 192 367 - -
Trre10g04907 929 Gene3D Actin; Chain A, domain 4 236 319 - -
Trre10g04907 929 Pfam NB-ARC domain 613 810 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04907 Trre-Chr10 56968829 56972561 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04907 1 550 Calmodulin-binding Proteins AT3G12580 78.545 0.0 902
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04907 K03283 - pvy:116146265 883.634