Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04905 ATGGCTTCTAATTCAGACCAATGGGTGAAGGAATACAATGAAGCAATGAAACTTGCTGATGACATCAGCAGCATGGTTTCTGAGTGGAGTTCAAATCCTGCATCGGGACCAGAAACCCAGCGGCAATCATCTGCTATAAGAAGGAAGATTACAATATTAGGGACTAGGCTTGATAGCTTGCAATCCCTTTTATCAAAGCTTCCTGCAAAGCCGCCGCTATCTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTACAAATTTGAGATCAAAAGTTAATGAAATGGCTTCTAAGCTGAACATGTCAAATTTCGCAAACAAGGATAGCTTGCTTGGTCCAGAAGTAAAACCAGATGTAATGAGTAGAACTGTTGGCCTGGACAACAATGGACTTGTTGGATTTCAACGACAAATTATTAAAGAACAAGATGAGAGTCTTGAGAGTTTGGAGCAGACTGTAATCAGCACAAAACACATTGCATTGGCAGTGAATGAAGAGCTTGGTCTACACACAAGACTCATTGATGATTTAGACCAACATGTTGACGTCACAGACTCTCGGCTTAGGCGGGTGCAAAAGAACTTGGCAGTATTAAATAAACGAGCCAAAGGTAGTTGCTCTTGCTTCAACATGCTCTTATCAGTCATCGGTATTGTATTTTTGGTTGTTATGATTTGGCTGTTGGTCAAATATTTGTAA 699 0.4092 MASNSDQWVKEYNEAMKLADDISSMVSEWSSNPASGPETQRQSSAIRRKITILGTRLDSLQSLLSKLPAKPPLSEKEMNRRKDMLTNLRSKVNEMASKLNMSNFANKDSLLGPEVKPDVMSRTVGLDNNGLVGFQRQIIKEQDESLESLEQTVISTKHIALAVNEELGLHTRLIDDLDQHVDVTDSRLRRVQKNLAVLNKRAKGSCSCFNMLLSVIGIVFLVVMIWLLVKYL 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04905 232 CDD SNARE_Qc 139 196 - -
Trre10g04905 232 SUPERFAMILY t-snare proteins 13 100 IPR010989 GO:0016020|GO:0016192
Trre10g04905 232 Gene3D - 138 200 - -
Trre10g04905 232 PANTHER SYNTAXIN 31 220 IPR045242 -
Trre10g04905 232 SUPERFAMILY SNARE fusion complex 127 197 - -
Trre10g04905 232 Pfam SNARE domain 173 223 IPR000727 -
Trre10g04905 232 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 136 198 IPR000727 -
Trre10g04905 232 SMART tSNARE_6 131 198 IPR000727 -
Trre10g04905 232 FunFam syntaxin-51 isoform X2 138 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04905 Trre-Chr10 56950533 56952071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04905 1 232 SNARE and Associated Proteins AT1G16240 68.240 2.94e-118 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04905 K08503 - gmx:100782666 370.933