Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04900 ATGGATTCGACGACGGATCCGCCACCGGAGATTGAGAACGGACGACGAGACGAACAAGAGGAACAACAACGGTGCAATAAGAAGGCGAAGGTTGATGTAATTGAGAACTCGGAATCGGTGGAATTGAAACGAGTGGCGGAGATTGTTTTGGTTTTATCAACGATGGCGACGATGCGTGGTGGAAAGAAACCTACTGATGTGGAAATTGAGCTTATGAGAGAGGCGAGGAGTAAGCTTGCGGTTCTATGTCAAGGGATTGCTCCCAAGGATATTGTTGCTGTTGAAGCTATTGGTTCTGTAATTCAGGATCTTGGTTTGAATGTTAAGGTCGAGGACCAGAGGTTAGGGTTTCGGACTACGCCGAAGATGTCTATTGCTGAACGGTATTCGTCTGCGAAATCGAAGATGGAGGAATCAAAGAAATTCTCTGCACCGTCCACAACATATACATCTCAGCCCTTGCAAACAAACACCAGTGGAATGGTTGACAATCGTGTGCCAACAAATGCTGTTCGAATGTTTGCGTCTGATAAATCAAACCACACGGCAATATCATCTACAGTTCCCATGGTGTCTATTCCTCCCCATATTTCTGCCGGATCTTCTGCAGCATTGCAATATCAATCAACCAGCAATGAAGTGAGACCACCCATTGTTTCTGGTGTAATGCCTAACAATCACATGGGAAGAAATCCATCGTCTGTAGCATTGCCTAGAGTTGAAAACCCACAGTTTAAAGTTACTGGAGGATTGAGTGGGGCTCCTTATGTGCTTCAGGTCCAAGCAAATTCACTGCCAAACCAATCATCGGTGAATGCTCCTACATGGTCATTACAGACTCAACCTGTGTCATTAGCTAGAAATGTATCAGAAAACAAGGCGCTGCCTGCTCATAACTCTGTCAAGGTTGAAGGAACTGCTGGTGCAACCGTATCTAGGACAGGTCCACAAGTAACAACAGCTCAGAGTGTTAGACCATTTATGACTCAAATGGGACCTGGAAATATGTCTAGCATGCACCAGCCATTGCAGGGTGGGAACATGGTTCAACCTCCTACTATTCCTAGTCACTCTGATATTGCAAAGGTTGTCCAGAAATTGTTGCTACCGAAGGTTCCTGACAATCCTACATGGACTCCTCCGTCAAGGGATTATATGAGTAAGACTTTCACATGTCAGACATGTGAGCTCACTGTCAGTGAGGTTGATTCTGTTCTTATGTGTGATGCTTGTGAAAAGGGATTTCACTTGAAGTGCCTGCAGCCAGCAGTCATTAGAGGAATTCATAATAGAGTTGATTGGCACTGCATGAGGTGCTTGAGTTTAAGTGGTGGAAAGCCTTTGCCTCCAAAATATGGCCGTGTGATGAGATCCTCAATTACATCACCAAGTTTTCCCTCTAATACAGCTGGTATTCAACCATCTTCAGAGAAGAAAGCAGAGAACTTAGATTCAAAGGTCAGCCCACAGATGTTTACATCAAATGGAAACTCTGTTCCAACTGTTTCCAGTGCCAATGAGTATACTGAGCCGTCATTTGACTCAAATACCCCTGATACGAGAGATATACAAGGTTCCAACATTTCATCTAGCATTGAAACCATTGATGAGAAGCCTGATCCGAACATATGTATGAAATCTGCTGCTTGTAGTGCTTCCACTGGCTTGCAGGGTGAAAATTATGCTGAACAAATAGATTCAAAGGCTTTGACCAGTAAAGATACTCCAGAATCTGAAACTCTTCCTAAATTATCTGAGCCAGCTAAATGTGAAAATTTGCAACCATCACAAGATTCTCAAGTTGAGATAACAGTGTTACACGACAATGCTGAAATATCATCAGATAGACACGTTAGCAATAGTTTGACAATTAGTAATCAAAAGGAATCTCATGGAGGAGAAAATATAACTTCTGATATCAACCACAATGACCTAGATGCTCCACAACCAAATTCTGTCGGAGGTTCTGGAACTAATACCGAAGGTATTCAGCACTCTGCTTTATCTTCAGATAGCTCACATGCTGTAGAATGGATTGGTGATGCTGTACAACTTGTTGATGAGAAAAAGTATTATCAATCTTGCTGCATTGATGGAGTAACATATAGGCTGCAGGGTCATGCTTTTTTCACATCCAACCATGGCAAATTAACACCTTCTAAACTTCAGTCTATGTGGGAAGATTCCAAAACTGGGGTGAAGTGGGTTAAGGCAACAAAGTGCTACTTCCCTGATGATTTGCCGGGGAATATCGGTCATCCTTGTATATCTGAAGTCAATGAGGTGTATGAATCTAATAGTGATAGAATAGAAATGGCTAGCTCTATCCGAGGCCCTTGTGTAGTCCTTCCATACGATAAATTTAAACAAGAAAATGACAGAAGATCTCAATTTGGAATTGAGGCAAGTGCTAGTGTACAGCCTATTTTCCTTTGCAGGTGGTTTTATGATGAAATCAAAAAATCATTTCAACCTGTTATCAGTTGA 2487 0.4238 MDSTTDPPPEIENGRRDEQEEQQRCNKKAKVDVIENSESVELKRVAEIVLVLSTMATMRGGKKPTDVEIELMREARSKLAVLCQGIAPKDIVAVEAIGSVIQDLGLNVKVEDQRLGFRTTPKMSIAERYSSAKSKMEESKKFSAPSTTYTSQPLQTNTSGMVDNRVPTNAVRMFASDKSNHTAISSTVPMVSIPPHISAGSSAALQYQSTSNEVRPPIVSGVMPNNHMGRNPSSVALPRVENPQFKVTGGLSGAPYVLQVQANSLPNQSSVNAPTWSLQTQPVSLARNVSENKALPAHNSVKVEGTAGATVSRTGPQVTTAQSVRPFMTQMGPGNMSSMHQPLQGGNMVQPPTIPSHSDIAKVVQKLLLPKVPDNPTWTPPSRDYMSKTFTCQTCELTVSEVDSVLMCDACEKGFHLKCLQPAVIRGIHNRVDWHCMRCLSLSGGKPLPPKYGRVMRSSITSPSFPSNTAGIQPSSEKKAENLDSKVSPQMFTSNGNSVPTVSSANEYTEPSFDSNTPDTRDIQGSNISSSIETIDEKPDPNICMKSAACSASTGLQGENYAEQIDSKALTSKDTPESETLPKLSEPAKCENLQPSQDSQVEITVLHDNAEISSDRHVSNSLTISNQKESHGGENITSDINHNDLDAPQPNSVGGSGTNTEGIQHSALSSDSSHAVEWIGDAVQLVDEKKYYQSCCIDGVTYRLQGHAFFTSNHGKLTPSKLQSMWEDSKTGVKWVKATKCYFPDDLPGNIGHPCISEVNEVYESNSDRIEMASSIRGPCVVLPYDKFKQENDRRSQFGIEASASVQPIFLCRWFYDEIKKSFQPVIS 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04900 828 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 6 826 - -
Trre10g04900 828 CDD BAH 699 826 - -
Trre10g04900 828 CDD PHD_SF 391 439 - -
Trre10g04900 828 MobiDBLite consensus disorder prediction 1 27 - -
Trre10g04900 828 ProSitePatterns Zinc finger PHD-type signature. 392 439 IPR019786 -
Trre10g04900 828 MobiDBLite consensus disorder prediction 459 478 - -
Trre10g04900 828 Pfam PHD-finger 392 440 IPR019787 -
Trre10g04900 828 MobiDBLite consensus disorder prediction 612 656 - -
Trre10g04900 828 MobiDBLite consensus disorder prediction 9 27 - -
Trre10g04900 828 Gene3D - 679 827 IPR043151 -
Trre10g04900 828 MobiDBLite consensus disorder prediction 615 656 - -
Trre10g04900 828 MobiDBLite consensus disorder prediction 486 526 - -
Trre10g04900 828 MobiDBLite consensus disorder prediction 141 163 - -
Trre10g04900 828 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 343 440 IPR013083 -
Trre10g04900 828 ProSiteProfiles BAH domain profile. 700 827 IPR001025 GO:0003682
Trre10g04900 828 SMART PHD_3 391 440 IPR001965 -
Trre10g04900 828 MobiDBLite consensus disorder prediction 459 526 - -
Trre10g04900 828 MobiDBLite consensus disorder prediction 136 163 - -
Trre10g04900 828 MobiDBLite consensus disorder prediction 567 597 - -
Trre10g04900 828 SUPERFAMILY FYVE/PHD zinc finger 383 447 IPR011011 -
Trre10g04900 828 ProSiteProfiles Zinc finger PHD-type profile. 389 442 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04900 Trre-Chr10 56921133 56927528 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre10g04900 PHD 5.8e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04900 - - gmx:100807139 1178.7