Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04880 ATGAACAAACTGTTCGGAGAGTCTCAAAAACTTGTGGCTGCCATATTTAGCTTGGCCAATAAGCTTCAGCCTGCCATCATATTCATTGATGAAGTAGACAGTTTTTTGGGTCAACGTCGTCAATCAGATCACGAGGCTATGAAAAACATGAAAACTGAGTTCATGGCTCTATGGGATGGATTCACCACCAACAAGAATGCTCAAGTTATGGTGCTTGCAGCAACTAATCGTCCTTCAGAACTTGATGAAGCGATACTCAGGCGGCTTCGTCAATCTTTTGAAATTAATTGGATATCCAGACCAGCAAGAGAGGGCTGA 318 0.4277 MNKLFGESQKLVAAIFSLANKLQPAIIFIDEVDSFLGQRRQSDHEAMKNMKTEFMALWDGFTTNKNAQVMVLAATNRPSELDEAILRRLRQSFEINWISRPAREG 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04880 105 Gene3D - 2 97 IPR027417 -
Trre10g04880 105 ProSitePatterns AAA-protein family signature. 69 88 IPR003960 GO:0005524|GO:0016887
Trre10g04880 105 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 103 IPR027417 -
Trre10g04880 105 Pfam ATPase family associated with various cellular activities (AAA) 2 95 IPR003959 GO:0005524|GO:0016887
Trre10g04880 105 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 2 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04880 Trre-Chr10 56814522 56815063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04880 2 90 Calmodulin-binding Proteins AT3G56690 36.264 5.94e-11 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04880 K22530 - bvg:104888176 164.851