Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04859 ATGTCGTCGTCGGCTTCAGAGATTCTCCAAGAACTTGAATCACTCAAGAACGAAAAGACTAAAATTGAAGACAAAATCTCACTTCTTGAAGCTCAATTGAAAGATATTAATCTCCAAAAACAAGCTTATGCATCATCCAATGGTTCTTCACCTTACCCTACAAATGGTTTGGAACCTCACATGATTCATAGATACAGTCGCCACCTTGTTCTCCCTTCTTTTGGTGTTCAAGGGCAAGCAAATCTGTCGAAGTCGTCAATTTTAGTTGTGGGAGCTGGAGGATTGGGTGCTCCTGCGTTGTTATATTTTGCAGCTTCTGGTGTTGGTAAATTGGGTATTGTTGATCATGACAAGGTTGAGTTGAGTAATATGCATAGACAGATTATACACACCGAAGCATATATTGGTCAGCCAAAAGTGAAATCCGCTGCTGCTGCTTGTCGCTCGGTCAACTCATCTATTGAAGTCGTGGAACATGAAGAAGCTTTGCGGACTTCCAATGCTTTGGAAATTTTCAGCAAATACGATATAATAGTGGATGCAACAGATAATGCTCCCACCCGGTATATGATCAGTGACTGCTGTGTAGTACTAGGAAAGCCCCTTGTATCAGGTGCTGCTGTAGGATTGGAAGGGCAGCTCACTATCTACAATCACAATGGTGGCCCTTGTTATCGATGTCTCTTTCCAACGCCACCACCTAGAACAGCATGCCAAAGTTGTGCCGACGCTGGTGTACTAGGAGTAGTTCCTGGTATAATTGGCTGTCTCCAAGCTCTCGAGGCAATTAAGATTGCAGCTTCTGTTGGTGAACCACTCTCCGGAAGAATGCTTCTCTTTGATGCATTGTCTGCACGGATCCGTATTGTTAAAATCAGAGGAAGGTCAATGCAATGTGAAGCTTGTGGAGAAAATGCAACATTTAATCAGCAGTACTTCCGAGAATTTGATTACGAGAAGTTTACTCAGACTCCTTTATTTGTGCCTCCTTTGAAGTTAAATCTACTTCCTAATGAATCAAGAATCAGCAGTAAGGAGTACAGCGAAATAATTCTCAACAAGGAACCACATGTGTTGGTTGATGTTAGACCAGCTCACCATTTCAAGATTGTGTCACTTCCAAATTCCTTGAACATTCCATTCTCAACTTTAGAGTCTAGGTTGCCGGAAATGTCATCAATTTTGAAGAAAGATGAAGAGGAAAAAGGCGCGGTTTCTGAATCAAATGCACAATTGTATGTAGTATGCAGGAGAGGAAATGATTCTCAAAGGGCTGTTCAATACCTTCACAAAATGGGTTTTACTTCTGCTAAGGATATTGTTGGAGGTTTAGAGTCTTGGGCTCAAAATGTTGATCCTAACTTCCCTACTTATTAG 1377 0.4161 MSSSASEILQELESLKNEKTKIEDKISLLEAQLKDINLQKQAYASSNGSSPYPTNGLEPHMIHRYSRHLVLPSFGVQGQANLSKSSILVVGAGGLGAPALLYFAASGVGKLGIVDHDKVELSNMHRQIIHTEAYIGQPKVKSAAAACRSVNSSIEVVEHEEALRTSNALEIFSKYDIIVDATDNAPTRYMISDCCVVLGKPLVSGAAVGLEGQLTIYNHNGGPCYRCLFPTPPPRTACQSCADAGVLGVVPGIIGCLQALEAIKIAASVGEPLSGRMLLFDALSARIRIVKIRGRSMQCEACGENATFNQQYFREFDYEKFTQTPLFVPPLKLNLLPNESRISSKEYSEIILNKEPHVLVDVRPAHHFKIVSLPNSLNIPFSTLESRLPEMSSILKKDEEEKGAVSESNAQLYVVCRRGNDSQRAVQYLHKMGFTSAKDIVGGLESWAQNVDPNFPTY 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04859 458 ProSiteProfiles Rhodanese domain profile. 353 456 IPR001763 -
Trre10g04859 458 CDD ThiF_MoeB_HesA_family 64 292 - -
Trre10g04859 458 Gene3D - 340 458 IPR036873 -
Trre10g04859 458 CDD RHOD_ThiF 333 458 - -
Trre10g04859 458 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 62 425 IPR035985 GO:0008641
Trre10g04859 458 Pfam Rhodanese-like domain 345 449 IPR001763 -
Trre10g04859 458 Gene3D - 59 308 - -
Trre10g04859 458 FunFam Adenylyltransferase and sulfurtransferase MOCS3 58 307 - -
Trre10g04859 458 SMART rhod_4 343 453 IPR001763 -
Trre10g04859 458 Hamap Adenylyltransferase and sulfurtransferase MOCS3 [MOCS3]. 1 458 IPR028885 GO:0002143|GO:0004792|GO:0005829
Trre10g04859 458 FunFam Adenylyltransferase and sulfurtransferase MOCS3 340 458 - -
Trre10g04859 458 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 61 316 IPR045886 -
Trre10g04859 458 Pfam ThiF family 65 300 IPR000594 -
Trre10g04859 458 Coils Coil 5 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04859 Trre-Chr10 56676373 56680660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04859 103 458 Sulfurtransferasese or Rhodanese AT5G55130 73.389 0.0 557
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04859 K11996 - gmx:100814736 771.155