Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04835 ATGATTTATGGTAGGTGTGCAGCTTGTAAGAGTCAAAGAAGAAGGTGTCCTTCTGATTGCATTTTCTCTCCTTATTTCCCTGCCAATGATCCTCAAAGATTTGCTTATGTTCACAAAATCTATGGTGGTAGCAATGTTGGAAAAATGCTTCAGCAATTGCCTGAGTATGTACGAGAACAAGCTGTAAATACTTTGTATTTAGAAGTACAATGTAGGATTCAAGATCCTGTTTATGGATGTGTTGGGATTGTCTCTAAATTGTATCAACAAATCCATGATGCAGAAGCTGAGCTGGCCAAAATCCAAACTCAAATTGCATGTCATAAGCTCAAAAATCAACAATTTGAAGTTGAATCAAATTTCAAGGTCTTGTCCACAGTTGATGATGAATCAAATTTGAACTTTTTGCCACCACAAAGTAATAGTATGGAGCAGTTTCAGTGGCCTGATCATGTTCCTAATTTGTTCAATTAA 474 0.3629 MIYGRCAACKSQRRRCPSDCIFSPYFPANDPQRFAYVHKIYGGSNVGKMLQQLPEYVREQAVNTLYLEVQCRIQDPVYGCVGIVSKLYQQIHDAEAELAKIQTQIACHKLKNQQFEVESNFKVLSTVDDESNLNFLPPQSNSMEQFQWPDHVPNLFN 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04835 157 Pfam Lateral organ boundaries (LOB) domain 5 102 IPR004883 -
Trre10g04835 157 ProSiteProfiles LOB domain profile. 4 105 IPR004883 -
Trre10g04835 157 Coils Coil 84 111 - -
Trre10g04835 157 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04835 Trre-Chr10 56528287 56529232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04835 5 121 AS2 family AT3G26620 58.974 1.61e-46 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre10g04835 LOB 4.9e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04835 - - lang:109328513 228.409