Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04827 ATGGAAAACTCTACAATTCATTTGTCTTTGGAGTATCTTAAGGCAGTAGAAGTTGAATTTCAACATGATAGGATCAAGTTAGATGTGTTTAAAAAAATGCTAAAAGATTTCAACGATGAAAAACTTGATGTAGGAGGTGTCAAAGTAAGAGTGAAGGGATTGTTTAAAGATCATACAAAGTTAATTTCAGGATTCAATATCTTCTTGCCCAAGGAACATCAAATCACTCCTAATTTAGAGTATGAAGATGCATCGGCGTTTACAAAGGCAATAAAAGACGCGTTTCAAGATAAGAAAGAAACTCATGAGGAGTATTTAGATATTCTTTTTGAATGGAAGTACAAAAGAGTTGGTAGATCAGTTGATATAAAGAGTATCATGGCAAGAATGAAGGAGTTGCTTAAAGAGCATATAGATTTATATTTTATATTTGAAGCATTCGTGTCACAAACTGAATATTCCGCGACAACCGGTAATCAATTCAAAGTTTATGACTCTAAGAAGAAAATCATGAAAAGAGAAGCGGAGAATGAAAGATCAAACAAATCATCGAAGAAACTCAAGATCAACAACAACAACAATAATAATAATAATAATAATAATAATAATAATAATGATAATGTCCAGCTACAAGAAGAGCGACCTGAGCTTCCGTTGGCGTTTAAAGAAAAGATTGAAGAGTTGGAAGGTAGTGATGTGATGTTGGTGATGCAAAAGGAACTAACCAAGAGTGACGTGACAAAAAACAACGGTCGGTTGTCCATCCCAAAAAGTGAATGTATTAACTGGAATTTCTTAAATTCTGAGGAGAAATCGTCCTTGGATTATGTGCAAGGGAAACATAAGGATTGTCATACTATGTCTGTGTCTGTGTTGGATCCTCGTGTTACAAAATACGACGGCATGCGCTTAACGAAGTGGAAAATGGTGACATCTGAAATCTACAATATCACAAGTGAATGGAAAAAACTCGTAGATGAAAATAAATTGAAAGAAGGACAAAAGGTGCAACTCTGGTCTTTTAGAAGTCATCGACAGCTTAACTTTGCACTCGTCAAGCTCTAG 1065 0.3474 MENSTIHLSLEYLKAVEVEFQHDRIKLDVFKKMLKDFNDEKLDVGGVKVRVKGLFKDHTKLISGFNIFLPKEHQITPNLEYEDASAFTKAIKDAFQDKKETHEEYLDILFEWKYKRVGRSVDIKSIMARMKELLKEHIDLYFIFEAFVSQTEYSATTGNQFKVYDSKKKIMKREAENERSNKSSKKLKINNNNNNNNNNNNNNNNDNVQLQEERPELPLAFKEKIEELEGSDVMLVMQKELTKSDVTKNNGRLSIPKSECINWNFLNSEEKSSLDYVQGKHKDCHTMSVSVLDPRVTKYDGMRLTKWKMVTSEIYNITSEWKKLVDENKLKEGQKVQLWSFRSHRQLNFALVKL 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04827 354 Gene3D Paired amphipathic helix 9 70 IPR036600 GO:0006355
Trre10g04827 354 Gene3D Paired amphipathic helix 73 150 IPR036600 GO:0006355
Trre10g04827 354 ProSiteProfiles PAH domain profile. 1 72 IPR003822 GO:0006355
Trre10g04827 354 SUPERFAMILY PAH2 domain 3 72 IPR036600 GO:0006355
Trre10g04827 354 Coils Coil 172 213 - -
Trre10g04827 354 ProSiteProfiles PAH domain profile. 75 151 IPR003822 GO:0006355
Trre10g04827 354 MobiDBLite consensus disorder prediction 186 208 - -
Trre10g04827 354 Gene3D - 226 351 IPR015300 -
Trre10g04827 354 SUPERFAMILY DNA-binding pseudobarrel domain 236 349 IPR015300 -
Trre10g04827 354 SUPERFAMILY PAH2 domain 75 149 IPR036600 GO:0006355
Trre10g04827 354 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 101 354 IPR005508 GO:0003677
Trre10g04827 354 MobiDBLite consensus disorder prediction 173 208 - -
Trre10g04827 354 Pfam B3 domain-containing protein At2g31720-like 226 327 IPR005508 GO:0003677
Trre10g04827 354 Pfam Paired amphipathic helix repeat 30 69 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04827 Trre-Chr10 56483344 56484505 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04827 216 351 B3 DNA Binding Superfamily AT1G05930 30.216 2.36e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre10g04827 DUF313 3.3e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04827 - - tpra:123920509 270.011