Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04826 ATGGAGTTCTCTAGTAAACGTGATGATGCATTCGCTTATCTTAAGCAATTAGAAGTTGCATTTAACCGTAATAGGATCAAGTATGAAGTGTTTATAGAAATTTTAGAAGATTACAAGGCTGGAAAAATTGATATAGGAGGTATGAAAGTAAGAGTCAAGGGATTGTTTAAAGATCATACACAATTAATTTCAGGATTTAATACCTTCCTGCCCAAGGAACATCAAATCACATCTAAGTTAGAGTTTGAAGATGGATCGGCGTTTTGTAAGGCGGTAAAAGACGCGTTTCAAGATAAGAGAGAAAGTTTTGATGAGTATTTAAATATTATGAAAGATTGGAAGTACGAAAGAGTTGATATAACAAGTTTCGTGGCACGAATGAAGGAGTTGCTTAAAGAGCATACCGATTTAATTTTTGGATTCAATATCTTCCTGCCAACTAAATATCAGATCACAATTCCCGGGACGAATGGTAATCAATTCAAAGGTGATGCTTCTCATGTTCGCTGTTCAAATAACCGCGAGTACTACACTGCTGTTTCAGAATGCAAAGATGATTTTAAGAAAAAAAGAAGCAAGAGATCAAAGAGACGAGATTTTAGCAGCATTCTTGAATGTGTTATCGTTGAATCAAAGAATCGCGAGGATGTTGTTGTTTGTGGATACAATGAAGGTTTTGATCAGAAATTAACACCAAAGAAAAGAAGAAGATCAAATACATCACATAGAGTTGAGTTTGAAATTCTTGATAGTGATGCTGGTGAAACTTCTTCATCCGATGAGGATTCTAAGATCACGAAAAGAGAAGTGAAGAAACGCAAGATCAACAATGACCAGATACAAGAAGAGCGACCTGAGCTTCCGTTGGCGTTTAAAGAAAAGATTGAAGAGTTGAAAGGTAGTGATGTGATGTTGGTGATTCAAAAGGAACTGACCAAGTGTGACTTGACAAAAAACCACGGTCGGTTGTCCATCCCAGAAAAACAAGTAATTAACGAGAAATTTCTAGAACCAAATGAGAAATCGTCCTTGCATTATGATCGTAAAGAGGGACGCAAGCAGCGTATTGGTATGTCAGTGTCTGTGTTGGATCCAAGTCTTGAAGTTTGGGATCGTATGTCCATCAAGAAATGGAGAATGGTGAAATCTGAAATCTACAATATCACAGACGATTGGTACGAACTCGTAAAGAAAAATAATTTGAAAGAAGGCCAAAAGGTGCAAGTCTGGTCTTTTAGAAGGCATCGACAGCTCTGCTTTGCACTCGTCAAGCTCTAG 1278 0.3725 MEFSSKRDDAFAYLKQLEVAFNRNRIKYEVFIEILEDYKAGKIDIGGMKVRVKGLFKDHTQLISGFNTFLPKEHQITSKLEFEDGSAFCKAVKDAFQDKRESFDEYLNIMKDWKYERVDITSFVARMKELLKEHTDLIFGFNIFLPTKYQITIPGTNGNQFKGDASHVRCSNNREYYTAVSECKDDFKKKRSKRSKRRDFSSILECVIVESKNREDVVVCGYNEGFDQKLTPKKRRRSNTSHRVEFEILDSDAGETSSSDEDSKITKREVKKRKINNDQIQEERPELPLAFKEKIEELKGSDVMLVIQKELTKCDLTKNHGRLSIPEKQVINEKFLEPNEKSSLHYDRKEGRKQRIGMSVSVLDPSLEVWDRMSIKKWRMVKSEIYNITDDWYELVKKNNLKEGQKVQVWSFRRHRQLCFALVKL 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04826 425 ProSiteProfiles PAH domain profile. 1 73 IPR003822 GO:0006355
Trre10g04826 425 ProSiteProfiles PAH domain profile. 78 148 IPR003822 GO:0006355
Trre10g04826 425 SUPERFAMILY PAH2 domain 6 73 IPR036600 GO:0006355
Trre10g04826 425 SUPERFAMILY DNA-binding pseudobarrel domain 305 422 IPR015300 -
Trre10g04826 425 CDD B3_DNA 307 420 IPR003340 GO:0003677
Trre10g04826 425 FunFam Paired amphipathic helix protein Sin3 84 146 - -
Trre10g04826 425 FunFam Paired amphipathic helix protein Sin3 9 71 - -
Trre10g04826 425 Pfam B3 domain-containing protein At2g31720-like 296 398 IPR005508 GO:0003677
Trre10g04826 425 Gene3D - 290 425 IPR015300 -
Trre10g04826 425 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 176 425 IPR005508 GO:0003677
Trre10g04826 425 Pfam Paired amphipathic helix repeat 27 70 IPR003822 GO:0006355
Trre10g04826 425 Pfam Paired amphipathic helix repeat 103 145 IPR003822 GO:0006355
Trre10g04826 425 SUPERFAMILY PAH2 domain 76 147 IPR036600 GO:0006355
Trre10g04826 425 Gene3D Paired amphipathic helix 9 71 IPR036600 GO:0006355
Trre10g04826 425 Gene3D Paired amphipathic helix 84 146 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04826 Trre-Chr10 56479792 56481156 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04826 286 422 B3 DNA Binding Superfamily AT1G05930 28.261 2.37e-13 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre10g04826 DUF313 2.8e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04826 - - tpra:123920509 634.024