Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04824 ATGCCCTCAGCTCAAGATCCATTTTACGTTGTCAAAGAAGATATTCAAGATTCTATTGATAGGTTGCAATCTAATTTTCACCAATGGGAAAACACTTCTGATAGTGGGGAGCATTTGAACCTTTCAAAGGAAGTTCTTGCTGCTTGTGGAAGTATTGAGTGGCAGGTGGATGAATTGGACAAAGCAATTTCTGTAGCATCTAGAGATCCCTCTTGGTATGGCATTGATGAAGTGGAGATTGAAAACAGGAGGAGGTGGACCAGCAATGCTCGCACCCAGGTTCGCACAGTTAAGAAAACAGTGGAAGCTGGAAAGGGATCAACTCATGCTAGTATAAATGGGATGCATAGGGAATTAATGAGGCTTCCAGATTCTCATCAAAGTACGTCCAAGTCTAACCAATATTCCGCTGGGGATAATGATGATTTCATAGAATCAGAATCAGATAGGCAAATGCTTCTTATAAAAAAGCAGGATGAGGAGTTAGATGAGCTTAGTTTAAGTGTACAAAGAATCGGAGGTGTTGGACTTACGATACATGAAGAGCTCCTCGGCCAGGAAAAAATTCTAGATGAACTTGGCAATGAGATGGACAGTACATCCAATCGTCTAGATTTTGTCCAAAAAAGAGTGGCGATGGTGATGAAGAAGACGAGTGCAAAGGGTCAGATCATGATGATATGTGGTTTGCTGGCCCTGTTCATTTTCCTTTTTATCTTGGTATTCTTCACCTAG 735 0.4136 MPSAQDPFYVVKEDIQDSIDRLQSNFHQWENTSDSGEHLNLSKEVLAACGSIEWQVDELDKAISVASRDPSWYGIDEVEIENRRRWTSNARTQVRTVKKTVEAGKGSTHASINGMHRELMRLPDSHQSTSKSNQYSAGDNDDFIESESDRQMLLIKKQDEELDELSLSVQRIGGVGLTIHEELLGQEKILDELGNEMDSTSNRLDFVQKRVAMVMKKTSAKGQIMMICGLLALFIFLFILVFFT 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04824 244 CDD SNARE_NTD_AtSYP61-like 5 102 - -
Trre10g04824 244 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Trre10g04824 244 FunFam syntaxin-61 isoform X1 155 216 - -
Trre10g04824 244 Coils Coil 190 210 - -
Trre10g04824 244 PANTHER GOLGI SNARE BET1-RELATED 126 241 - -
Trre10g04824 244 SUPERFAMILY t-snare proteins 5 101 IPR010989 GO:0016020|GO:0016192
Trre10g04824 244 FunFam Syntaxin 10 3 104 - -
Trre10g04824 244 Gene3D - 159 223 - -
Trre10g04824 244 Coils Coil 12 32 - -
Trre10g04824 244 Pfam SNARE domain 189 240 IPR000727 -
Trre10g04824 244 SUPERFAMILY SNARE fusion complex 150 214 - -
Trre10g04824 244 CDD SNARE_Qc 155 212 - -
Trre10g04824 244 Gene3D - 2 104 - -
Trre10g04824 244 SMART tSNARE_6 147 214 IPR000727 -
Trre10g04824 244 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 152 214 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04824 Trre-Chr10 56467563 56471169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04824 55 244 SNARE and Associated Proteins AT1G28490 69.430 1.11e-92 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04824 K08500 - gmx:100793612 386.726