Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04821 ATGGTTGATATTCAGATCCCAAGCACGTTCGATCCATTTGCGGAGGCTAAAGAATCAGATGCACCGGGTACAAAAGAGTACGTGCATATTCGCATACAACAAAGGAATGGAAAGAAGAGCCTAACGACGGTGCAAGGGCTGAAAAAAGAGTTCAGCTATGAGAAGATCTTAAAAGATCTCAAGAAAGAGTTTTGTTGCAATGGAAATGTTGTGAATTGTAAGGATCTTGGCAAGATTATTCAACTCCAAGGTGATCAACGCAAGAATGTTTCTCACTTTCTTGTTCATGCTAATCTTGTCAGAAAGGACAGCATCAAGATTCATGGTTTCTGA 333 0.4024 MVDIQIPSTFDPFAEAKESDAPGTKEYVHIRIQQRNGKKSLTTVQGLKKEFSYEKILKDLKKEFCCNGNVVNCKDLGKIIQLQGDQRKNVSHFLVHANLVRKDSIKIHGF 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04821 110 SUPERFAMILY eIF1-like 2 110 IPR036877 GO:0003743|GO:0006413
Trre10g04821 110 Pfam Translation initiation factor SUI1 25 96 IPR001950 GO:0003743|GO:0006413
Trre10g04821 110 CDD eIF1_SUI1 26 109 IPR005874 GO:0003743
Trre10g04821 110 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 6 110 - -
Trre10g04821 110 PIRSF Transl_init_SUI1_Euk 1 110 IPR005874 GO:0003743
Trre10g04821 110 NCBIfam translation initiation factor SUI1 3 110 IPR005874 GO:0003743
Trre10g04821 110 FunFam Eukaryotic translation initiation factor SUI1 1 110 - -
Trre10g04821 110 Gene3D - 1 110 - -
Trre10g04821 110 ProSiteProfiles Translation initiation factor SUI1 family profile. 28 98 IPR001950 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04821 Trre-Chr10 56456778 56457110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04821 2 110 Eukaryotic Initiation Factors Gene Family AT5G54940 79.817 8.08e-63 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04821 K03113 - gmx:100499676 198.749