Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04820 ATGGGCAGTTGTCTCAGTAAAAAAGAATCAAAACCTATTGTTAAAAGACCAGATACAAATACAATCTTAGGTAAACAATTTGAAGATATAAGAAAAATTTACAAATTTGGTAAAGAATTAGGGAGAGGAGAATTTGGTGTGACTTATCTATGCACTGAGAAATCAACTAGTTTGAAATATGCTTGCAAGTCAATTTCAAAGAAGAATTTTGTTAGTAAAGATGAAAAAAAAGAAGAGATAAAGAGGGAGATTCAAATCATGCAGCATATGAGTGGAAAACCAAATATTGTTGTGTTTAAAGGTGCTTATGAGGATAAAAATTCAGTTCATATTGTTATGGAACTTTGTGTTGGTGGTCAGCTTTTAGATAAGATTACTGCTAAGAGGAGATATAGTGAAAGAGATGCAGCTTCAATTTGCAAACAAATTGTTAATATTGTTCATATTTGTCATTCTGTGGGCGTTATGCATAGAGATTTGAAGCCTGGAAATCTCTTGTTGTCTAGTAACGATGATAAGGCTACTATCGTGGCCACTGATTTTGGCTTTTCGGTTTTCATCGAAGAAGGAAAGGTATATACCGATATAGTTGGCAGTGTATATTACATTGCACCAGAAGTTCTGCGTCGGAAATATGGGAAAGAAATAGATATATGGAGTGCAGGAGTTATTTTATATATCTTAATTTGTGGTGTGCCTCCATTTTGTGCAGAGACGCAAGAGGGAATATTCGAAGCCATACTGCAAGGTCATATCGACTTTTATTATCCTCCATGGCCAATCATATCAAACAGCGCTAAGGACCTTGTTCGTAAGATGCTTACACAAGATCCAAAGAAACGCATTACTGCTTCTCAGGTTCTAGAGCATCCATGGATTAAAGAAGGTGGAAATGCTTAA 900 0.3533 MGSCLSKKESKPIVKRPDTNTILGKQFEDIRKIYKFGKELGRGEFGVTYLCTEKSTSLKYACKSISKKNFVSKDEKKEEIKREIQIMQHMSGKPNIVVFKGAYEDKNSVHIVMELCVGGQLLDKITAKRRYSERDAASICKQIVNIVHICHSVGVMHRDLKPGNLLLSSNDDKATIVATDFGFSVFIEEGKVYTDIVGSVYYIAPEVLRRKYGKEIDIWSAGVILYILICGVPPFCAETQEGIFEAILQGHIDFYYPPWPIISNSAKDLVRKMLTQDPKKRITASQVLEHPWIKEGGNA 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04820 299 FunFam Calcium-dependent protein kinase 5 121 299 - -
Trre10g04820 299 PIRSF ILK 1 290 - -
Trre10g04820 299 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
Trre10g04820 299 Gene3D Transferase(Phosphotransferase) domain 1 118 299 - -
Trre10g04820 299 Pfam Protein kinase domain 34 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04820 299 FunFam Calcium-dependent protein kinase 1 36 120 - -
Trre10g04820 299 PANTHER SERINE/THREONINE-PROTEIN KINASE 28 298 - -
Trre10g04820 299 Gene3D Phosphorylase Kinase; domain 1 24 116 - -
Trre10g04820 299 ProSitePatterns Protein kinases ATP-binding region signature. 40 63 IPR017441 GO:0005524
Trre10g04820 299 CDD STKc_CAMK 34 292 - -
Trre10g04820 299 ProSiteProfiles Protein kinase domain profile. 34 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04820 299 SMART serkin_6 34 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04820 299 SUPERFAMILY Protein kinase-like (PK-like) 21 295 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04820 Trre-Chr10 56454501 56456056 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04820 19 299 EF-hand Containing Proteins AT3G20410 70.107 6.49e-151 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre10g04820 Pkinase 2.6e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04820 K13412 - cit:107176513 442.965