Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04819 ATGGGTGCTTGTCTCAGTAAAAAAGAATCAGAGCTAGAACATAGACATGTTGGTGTTTCTGGTATGCATAATCACAATCACAATCATAATCACAAGAATCATAAACCCTATGAGAATCAACCAAAAGCTCCTTTTCAACAACCTTACCAATTACCTAACAAACATGTTCCAAGGCCAAAACCTATTGTTAAGAGACCAGATACAAACACAATTCTAGGTAAACAATTTGAAGACGTAAGAAAAATTTACACACTTGGGGAAGAATTAGGGAGAGGAAAATGTGGTGTAACTTATCTATGTACTGAGAATTCAACTGGTTTGAAATATGCTTGCAAGTCAATTTCAAAGAGAAAATTTGTTAGTAAAGCTGAAACAGAAGAGATAAAGAGGGAGATACAAATCATGCAACATATGAGTGGAAAACCAAATATTGTTGTGTTTAAAGGTGCTTATGAGGATAAAAATTCAGTTCATGTTGTCATGGAACTTTGTGTTGGTGGTCAGCTTTTTGATAGGATTACTGCTAAAGGGAGATATAGTGAAAGAGAGCAGCGTCAATTTGCAGACAAATTTGAGGATGATAAGGCTACTATCATTGCCACTGATTTCGGCTTGTCGGTTTTCGTCGAAGAAGGAAAGGTATATACTGATATAGTTGGCAGTGCATATTACGTTGCACCAGAAGTTCTACGACAGAAATATGGGAAGGAAATGGATATATGGAGTGCAGGAGTTATTTTGTATATCTTACTTTGCGGCGTGCCTCCATTTTGGGCAGAGATGCAAAAGGGGATATTCGAAGCCATATTGCAAGGTCATATTGACTTTTATAGTCCTCCATGGCCAATCATATCAAACAGCGCTAAGGACCTTGTTCGTAAGATGCTTACACAAGATCCAAAGAAACGTATTACTGCTTCTCAGGTTCTAGAGCATCCATGGCTTAAAGAAGGTGGAAATGCTTCTGACAAGCCAATAAACAGTGCATAA 990 0.3768 MGACLSKKESELEHRHVGVSGMHNHNHNHNHKNHKPYENQPKAPFQQPYQLPNKHVPRPKPIVKRPDTNTILGKQFEDVRKIYTLGEELGRGKCGVTYLCTENSTGLKYACKSISKRKFVSKAETEEIKREIQIMQHMSGKPNIVVFKGAYEDKNSVHVVMELCVGGQLFDRITAKGRYSEREQRQFADKFEDDKATIIATDFGLSVFVEEGKVYTDIVGSAYYVAPEVLRQKYGKEMDIWSAGVILYILLCGVPPFWAEMQKGIFEAILQGHIDFYSPPWPIISNSAKDLVRKMLTQDPKKRITASQVLEHPWLKEGGNASDKPINSA 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04819 329 ProSiteProfiles Protein kinase domain profile. 83 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04819 329 Gene3D Transferase(Phosphotransferase) domain 1 162 328 - -
Trre10g04819 329 CDD STKc_CAMK 83 314 - -
Trre10g04819 329 Gene3D Phosphorylase Kinase; domain 1 73 161 - -
Trre10g04819 329 FunFam Calcium-dependent protein kinase SK5 225 320 - -
Trre10g04819 329 FunFam Calcium-dependent protein kinase 1 85 168 - -
Trre10g04819 329 PANTHER SERINE/THREONINE-PROTEIN KINASE 195 325 - -
Trre10g04819 329 MobiDBLite consensus disorder prediction 20 49 - -
Trre10g04819 329 Pfam Protein kinase domain 196 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04819 329 Pfam Protein kinase domain 83 188 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04819 329 SUPERFAMILY Protein kinase-like (PK-like) 64 319 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04819 Trre-Chr10 56449866 56451685 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04819 59 329 EF-hand Containing Proteins AT3G20410 65.993 8.74e-139 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre10g04819 Pkinase 5.7e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04819 K13412 - gmx:100794852 458.373