Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04814 ATGGCTATTACCATCACTTCACCAACTATGACTAAGTGGTTTTGTGGAACAATAGAAGCAATAAATAAGTGTAAGAGAGTTTTTTCTTTGAGGGTGTTGAGTCTCATTGGTTGTTCTGCATTTGAGAAATTCATCAAAGTTATGGAGAGAGTTCTTTTTGTTGCATTTACTTGTATTATAGCATTTGGAGGGTCAATAGTAGGATCAATAGCAGGAGCTATCAAAGGACAGACAACAGAATCTGGTTTTCTTGATGGAGCTGGCAAAGGAGCAATTGCTGGAGCTATTGCAGCCATAGAATTGATGAGTTTTTCTTCTGTTGAGCCATTTTCCAAGGTTGCTTTGTTGAGAAGTTTATTAAATGGAAAAGTGTTTATGGAATGGATATGTCCAACTGTTGCACAAGCTTATCTATTTTATATCAATTCACTAGAAACAACTTATGGAGGACTGTTTTCAGATATTTATGACAACATGGGAGTTAAGGGTATGTCCCAAAGTTGTATTATGAAGCTTCCATTTCAACGTTTCAGCTCCAAAAAAATGATGAAATTATACAATGAGTCATGCTGCTCAATTTGCTTCCAGGATTTTGAGGATGGAGAATTGGTCAGAACACTTCCAAAATGTTGCCACATTTTTCATTTAGAATGCATTGATAAGTGGCTTGTCCAACAAGGATCATGTCCTATTTGTAGAACTTATGTTCCTCACCACATTCATGAATAG 729 0.3621 MAITITSPTMTKWFCGTIEAINKCKRVFSLRVLSLIGCSAFEKFIKVMERVLFVAFTCIIAFGGSIVGSIAGAIKGQTTESGFLDGAGKGAIAGAIAAIELMSFSSVEPFSKVALLRSLLNGKVFMEWICPTVAQAYLFYINSLETTYGGLFSDIYDNMGVKGMSQSCIMKLPFQRFSSKKMMKLYNESCCSICFQDFEDGELVRTLPKCCHIFHLECIDKWLVQQGSCPICRTYVPHHIHE 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04814 242 SUPERFAMILY RING/U-box 184 238 - -
Trre10g04814 242 ProSiteProfiles Zinc finger RING-type profile. 191 233 IPR001841 -
Trre10g04814 242 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 42 234 IPR044523 -
Trre10g04814 242 Pfam Ring finger domain 191 233 IPR001841 -
Trre10g04814 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 239 IPR013083 -
Trre10g04814 242 SMART ring_2 191 232 IPR001841 -
Trre10g04814 242 CDD RING-H2_EL5-like 190 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04814 Trre-Chr10 56423105 56425024 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04814 52 236 C3H Transcription Factor Family AT5G66070 37.245 8.53e-37 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04814 - K19041 mtr:11435458 372.089