Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04806 ATGAGTGTAGTTGGGTTTGATATTGGAAATGAGAATTGTGTAATTGCTGTAGTGAAGCAAGGTGGGGTTGATGTTTTGTTGAATGATGAATCGAACCGCGAAACCCCTGCTATTGTTTGCTTCGGAGAGAAGCAACGGTTTTTAGGGTCTGCTGGTGCTGCTTCTGCTATGATGCATCCGAAATCGACAGTATCTCAAGTCAAGAGACTAATAGGAAAGAGATTTGATGACCCTGATGTTCAAAATGACCTAAAAATGCTCCCTGTTGAAACTTCCGAAGGTCCAGATGGCGGCATTTTGATTCACTTGAAATACTTAAAGGAGGATCATAAGTTTACGCCGGTTCGAATATTAGCAATGCTCTTTGCACATTTGAAGGCTATTGCTGAAAATGATTTGGGGACCACTGTTACGGATTGTGTTATTGGAGTTCCGTTATACTTTACTGACTTGCAGAGACGAGCGTATCTCGATGCGGCAACAATTGTTGGGTTGAAGCCTTTGAAGTTGATACATGATTGCACGGCAATAGGTCTTGGTTATGGTGTTTACAAAACAGATTTTCCTGATAGAGATCCTATTTACGTTGCCTTTATTGACATAGGCCACTGCGATACTCAGGTCTCTATTGCAGAATTTCAGGCCGGGAAAATGAAGATTCTTTCACATACTTTCGATAGTAGCTTAGGGGGTAGAGATTTTGACGAAGTTCTGTTTAAACATTTCGCTGTGGAATTTAAGGAACAGTACAACATTGACGTGTATTCTAACGCCAGAGCTTGTAGTAGGCTGCGTGCGGCGTGTGAGAAGTTGAAGAAAGTTTTGAGTGCAAATTTAGAGGCACCAATTAACATTGAGTGTTTGATGGATGAAAAAGATGTTAGTGGATTTATCAAGAGGGAAGAATTCGAGAATTTGGCTTCAGGATTATTGGAGAGAATTTGTATTCCTTGCAATAGAGCATTGGCTGACGCAGGCTTGAGCGTTGATAAGATTAATTCGGTTGAATTAGTTGGTTCAGGTTCAAGAATTCCTGCTATAACTAGATTATTAACCTCTCTATTTGAGAAAGAACTCAGCCGAACACTGAATGCAAGCGAGTGTGTAGGTCGTGGTTGTGCTCTTCAATGTGCAATACTCAATCCTGTTTCCCGTGTCAAAGAATATGAGGTCGAGGATTCTACTCCTTTTTCTATTGGACTTTCCTCGGACGAAGGTCCAATTTGTGAAAATTCAAATGGTATACTTTTCCCAAAAGGCGAACCGATTCCAAGTTCTAAAACTCTTACGTTACAGAGCAGTAATTTACTACGTTTTGAAGCTTTCTATCCTAATCTACCTGAATTACCAAAGGGGATATCTCCTAAAATTGGTTGCTTCACGATTGGTCCTCTACCCGAATCCGATGGAAGTAAGGCAGTATTTGAAGTTATATTTCAACTAAATCTGCATGGCATTGTCAATATTGAATCATCTACATTGATCGAGAATCATATGGAAGATTCTGTTACAACGCGTGATAATCATTCAAATTCTGACGCAATGGATGTTGAACCGATTTCTGAGACAGATCAAAATGTCAACGAACATAGTATCAATCAGAAGAGTGGATCTCCACATAGTTCTTCTGATGGTACAGGAAAAGATAAAGCCAACAGAAGGCTTAACGTACCGGTGAGTGAGACCATATTCGGCGGAATGACCAATGCTGAAATCACGGAAGCTCGAGAAAAAGAACCTCTGTTAATCCAGCAGGATGTAGCAATGGAATTAACCAAAAACAAGAGGAACTCTTTGGAGTCATACATCTACGACACGAGGAATAAGCTCTTCAACGAATACCGTAATTTTGCAAGTGAACAAGAGAAGGATGAAATATCCGGGAGCCTGCAAGAGACTGAGAGATGGCTTTATAATGAAGGCAATGATGAAACAGTTCATACTTATTTTGAAAAACTCGAAGATCTAAAACAGTTGGTGGATCCAGTCGACAACCGGTACAAAGATGAAGAAGCAAGAGTGCAATCTACAAGAGATCTATTAGGTTGCATCGTCGAGCATCGCATGTCTTCAGATTCTCTTTCACCCGAAGATAAAGAAAAGATCATCGAAGAGTGTAACAAAGCAGAAAAATGGCTAAGAGACAAGAGGCAACATCAAGATGCTTTGCCTAAGTGCGCTGATCCAGTATTTTGGTCAAGGGACATCGATATCAGGACACGAGATTTAAACTTAGCATGCCAAAAGATATTGGGAACCAAGGGTTCTACATTTCCAGAAGACAAGGAAGACAAAGGTTAA 2301 0.4042 MSVVGFDIGNENCVIAVVKQGGVDVLLNDESNRETPAIVCFGEKQRFLGSAGAASAMMHPKSTVSQVKRLIGKRFDDPDVQNDLKMLPVETSEGPDGGILIHLKYLKEDHKFTPVRILAMLFAHLKAIAENDLGTTVTDCVIGVPLYFTDLQRRAYLDAATIVGLKPLKLIHDCTAIGLGYGVYKTDFPDRDPIYVAFIDIGHCDTQVSIAEFQAGKMKILSHTFDSSLGGRDFDEVLFKHFAVEFKEQYNIDVYSNARACSRLRAACEKLKKVLSANLEAPINIECLMDEKDVSGFIKREEFENLASGLLERICIPCNRALADAGLSVDKINSVELVGSGSRIPAITRLLTSLFEKELSRTLNASECVGRGCALQCAILNPVSRVKEYEVEDSTPFSIGLSSDEGPICENSNGILFPKGEPIPSSKTLTLQSSNLLRFEAFYPNLPELPKGISPKIGCFTIGPLPESDGSKAVFEVIFQLNLHGIVNIESSTLIENHMEDSVTTRDNHSNSDAMDVEPISETDQNVNEHSINQKSGSPHSSSDGTGKDKANRRLNVPVSETIFGGMTNAEITEAREKEPLLIQQDVAMELTKNKRNSLESYIYDTRNKLFNEYRNFASEQEKDEISGSLQETERWLYNEGNDETVHTYFEKLEDLKQLVDPVDNRYKDEEARVQSTRDLLGCIVEHRMSSDSLSPEDKEKIIEECNKAEKWLRDKRQHQDALPKCADPVFWSRDIDIRTRDLNLACQKILGTKGSTFPEDKEDKG 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04806 766 Gene3D - 186 360 - -
Trre10g04806 766 PANTHER HSC70CB, ISOFORM G-RELATED 1 756 - -
Trre10g04806 766 MobiDBLite consensus disorder prediction 501 557 - -
Trre10g04806 766 FunFam Heat shock 70 kDa protein 4 567 677 - -
Trre10g04806 766 CDD HSPA4_like_NDB 2 380 - -
Trre10g04806 766 Gene3D - 38 113 - -
Trre10g04806 766 FunFam Heat shock 70 kDa protein 4 38 113 - -
Trre10g04806 766 FunFam Heat shock 70 kDa protein 4 1 76 - -
Trre10g04806 766 SUPERFAMILY Actin-like ATPase domain 192 380 IPR043129 -
Trre10g04806 766 SUPERFAMILY Actin-like ATPase domain 1 185 IPR043129 -
Trre10g04806 766 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 387 538 IPR029047 -
Trre10g04806 766 MobiDBLite consensus disorder prediction 514 545 - -
Trre10g04806 766 Gene3D Actin; Chain A, domain 4 230 313 - -
Trre10g04806 766 PRINTS 70kDa heat shock protein signature 2 15 - -
Trre10g04806 766 PRINTS 70kDa heat shock protein signature 332 348 - -
Trre10g04806 766 PRINTS 70kDa heat shock protein signature 472 488 - -
Trre10g04806 766 PRINTS 70kDa heat shock protein signature 30 42 - -
Trre10g04806 766 PRINTS 70kDa heat shock protein signature 363 383 - -
Trre10g04806 766 PRINTS 70kDa heat shock protein signature 140 160 - -
Trre10g04806 766 PRINTS 70kDa heat shock protein signature 388 407 - -
Trre10g04806 766 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 385 600 IPR029047 -
Trre10g04806 766 Gene3D - 567 680 IPR029048 -
Trre10g04806 766 FunFam Heat shock 70 kDa protein 4 110 192 - -
Trre10g04806 766 Pfam Hsp70 protein 3 667 IPR013126 GO:0005524|GO:0140662
Trre10g04806 766 FunFam Heat shock 70 kDa protein 4 230 313 - -
Trre10g04806 766 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 569 666 IPR029048 -
Trre10g04806 766 Gene3D - 5 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04806 Trre-Chr10 56380953 56384382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04806 4 491 Calmodulin-binding Proteins AT1G16030 31.936 2.10e-80 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04806 K09489 - gmx:100795914 1115.91